Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P02
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07696.1 68415.m00947 ribosomal protein S7 family protein con... 45 5e-05
At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam ... 33 0.22
At5g06970.1 68418.m00789 expressed protein 31 0.50
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 31 0.66
At5g20640.1 68418.m02452 hypothetical protein contains Pfam prof... 30 1.2
At2g43945.1 68415.m05462 expressed protein 30 1.5
At3g48640.1 68416.m05310 expressed protein 29 2.0
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi... 29 2.0
At4g28360.1 68417.m04059 ribosomal protein L22 family protein 29 3.5
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 28 4.7
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 6.1
At3g20020.1 68416.m02533 protein arginine N-methyltransferase fa... 27 8.1
>At2g07696.1 68415.m00947 ribosomal protein S7 family protein
contains Pfam profile PF00177: Ribosomal protein S7p/S5e
Length = 148
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +1
Query: 379 KRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIXLNPKDILYKAVENCKPLLQLQPIK 558
K L ++LV + KR ++ R + T A+ + ++ AVEN KP+ ++ +
Sbjct: 9 KLLIKKLVNFRMKEGKRTRV-RAIVYQTFHRPARTERDVIKLMVDAVENIKPICEVAKVG 67
Query: 559 RGGITYQVPGPITEKRSLFLAIKWLLQ 639
G Y VPG + R LAI+W+L+
Sbjct: 68 VAGTIYDVPGIVARDRQQTLAIRWILE 94
>At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 109
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 136 NSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNRATVPVKPPTVSET 315
N + L +I + + +S + +F+K ++V L+ DSD+ P + PTV T
Sbjct: 16 NMGRKKLKLKRIESLKERSSKFSKRKKGLFKKAEEVALLCDSDIMLIVVSPTEKPTVFNT 75
Query: 316 SSVYFDPLVNK 348
S F ++ +
Sbjct: 76 RSRSFHTILER 86
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 410 HSKISKGNKLNDTIWLLHQKKKPKXS*ILRTFYIKPLKIANHCYNYSPSR 559
H +S+ +KL D++WL KKP+ ++R ++ K N ++ SR
Sbjct: 854 HYAVSQLSKLEDSMWLRWIAKKPREKIVIRKSMVEKSKSFNQKESFEGSR 903
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 31.1 bits (67), Expect = 0.66
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Frame = +1
Query: 112 RRLKNSSFNSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNRATV-- 285
R+ K S N T+ Q+ Y DY+++ R+E+ V+ DS K + +
Sbjct: 39 RKRKESLENVKEETVGAAQLLGYDLVEKASDYHESKNLRREEHVE---DSSRKEKEAISR 95
Query: 286 --------PVKPPTVSETSSVYFDPLVNKVIN-HVMEKGNKRLARQLVEKAFENIKRKQI 438
P+K V + + LV KV++ H EKG R + E+ + RK+
Sbjct: 96 CREEKIEKPMKEDPVG-AAQLPDKNLVEKVLDCHESEKGYDRSEKLSHEELVMDSSRKKE 154
Query: 439 ERYHLASTPEEK 474
E ++S+ EEK
Sbjct: 155 EA--ISSSREEK 164
>At5g20640.1 68418.m02452 hypothetical protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 215
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 247 LIADSDLKNRATVPVKPPTVSETSSVYFD---PLVNKVINHVMEKGNKRLARQLVEKAFE 417
L+ +S +K V KPP +S T + Y + + N +M+ K +A+ +EK E
Sbjct: 119 LVQNSSIK--ILVHGKPPKISSTRNNYVEIKGSFAERACN-IMDSDGKAIAKVRIEKEME 175
Query: 418 NIKRKQIERYHLASTP 465
+ + + YH+ P
Sbjct: 176 EMVGNKKDLYHVIVKP 191
>At2g43945.1 68415.m05462 expressed protein
Length = 289
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +1
Query: 106 FYRRLKNSSFNSSTRTLSKLQIRNYAKATS--FPDYYQNP-----IFRKEDQVKLIADSD 264
F RRL +SS SS L + R+Y++ + P++ +N + K+D ++ + +SD
Sbjct: 41 FKRRLSSSSCCSSQSQLFSGRCRSYSRCVTMCLPEHMRNQENTEILTDKDDHIECVLESD 100
Query: 265 LKNRATVPVKPPTVSETS 318
+ +P + + E S
Sbjct: 101 EDSGLRIPTQAQAIVEGS 118
>At3g48640.1 68416.m05310 expressed protein
Length = 224
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Frame = +1
Query: 130 SFNSSTRTLSKLQIRNYAKATSFPD---YYQNPIFRKEDQVKLIADSDLKNRATVPVKPP 300
S+N ++++ L + N K + + Y + + + QV + D N V K
Sbjct: 33 SWNEGLKSIANLYLENTTKTLNLFEKFMYTEEVVTQYVCQVNVYWDHVTTNWDHVTTKTR 92
Query: 301 TVSETSSVYFDPLVNKVIN----HVMEKGNKRLARQLVEKAFENIKRKQIERY 447
+SE +Y D + + HVM G R ++EK +++ KRK+I ++
Sbjct: 93 KLSE-KFMYTDEFATQYESVYRDHVMLLGKIRELEVVLEKKYKHAKRKRIMKF 144
>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (8 copies at C-terminus)
Length = 961
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 331 DPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEK 474
D N V HV+E+G RQ++EK N+ Q+ ++ AS EK
Sbjct: 820 DQYGNYVTQHVLERGKPDERRQIIEKLTGNV--VQMSQHKYASNVVEK 865
>At4g28360.1 68417.m04059 ribosomal protein L22 family protein
Length = 271
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 112 RRLKNS-----SFNSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNR 276
RR+KNS +++SSTR L + Y ++ P Y P++ Q+ + L+
Sbjct: 17 RRVKNSHISTANYSSSTRNLESPFSQGYLQSLLRPSYSSRPLYHHLQQLGISTSRQLQ-A 75
Query: 277 ATVPVKPPTVS 309
+ PV P S
Sbjct: 76 SEEPVSSPLSS 86
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +1
Query: 211 QNPIFRKEDQVKLIADSDLKNRATVPVKP-PTVSETSSVYFDPLVNKVINHVMEKGNKRL 387
Q+ + E Q+ SD+ R+ P++P P +E + V K + ++K + +
Sbjct: 592 QSKVKDLESQLSKALKSDM-TRSRDPLEPQPRAAENT--LDSSAVTKKLEEELKKRDALI 648
Query: 388 AR--QLVEKAFENIKRKQIERYHLASTPEEKAKIXLNPKDI 504
R + EK F+ + K + S+P KA + P D+
Sbjct: 649 ERLHEENEKLFDRLTEKSVASSTQVSSPSSKASPTVQPADV 689
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 385 LARQLVEKAFENIKRKQIERYHLASTPEEKAKIXLN 492
++R+ KA + +KRKQ+ R +A+ E+AK LN
Sbjct: 33 MSRKEKRKAMKKLKRKQV-RKEIAAKEREEAKAKLN 67
>At3g20020.1 68416.m02533 protein arginine N-methyltransferase
family protein similar to SP|Q96LA8 Protein arginine
N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
Length = 435
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 235 DQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAF 414
+Q K SD +T P PPT + + VYF ++ + V+E G+ L++ K F
Sbjct: 356 NQKKRTNPSDALVLSTSPESPPTHWQQTIVYFYDPIDVEQDQVIE-GSVTLSQSKENKRF 414
Query: 415 ENI 423
NI
Sbjct: 415 MNI 417
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,239
Number of Sequences: 28952
Number of extensions: 261475
Number of successful extensions: 741
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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