Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    30   0.34 
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    29   0.44 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   5.5  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   5.5  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.5  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   9.5  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   9.5  

>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 203 SIYSLPXEVISIILKNNDCQEILNFSSTCKHFNELXNTD 319
           ++ +LP E++ II    D + +L+   TCK++ +L + D
Sbjct: 30  TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDD 68


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +2

Query: 203 SIYSLPXEVISIILKN-----NDCQEILNFSSTCKHFNELXNTD 319
           +I  LP EV+ +IL+N     +D + + + + TCKHF +    D
Sbjct: 111 NILKLPDEVLLVILENCIRDLHDLRYLSSIALTCKHFAKALRAD 154


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 446 VFSELKTMSPTHYCKRDDLTKQDVRDFFNVAI 541
           V  ++KT +P HYC R +  K + +   NV +
Sbjct: 33  VIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQV 64


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 336 SFHNCWSVFXNSLKCLQ-VELKLSISWQSLFFSIIEI 229
           S+  CWSVF  +LK L  VE +     + L +  I I
Sbjct: 277 SWRECWSVFYETLKILSLVETRYEFEHRDLHWGNILI 313


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 36  VTQRICKLFTYIRCLKCKFCSVLYN 110
           V+ RI ++F  +  +KC  CSV+++
Sbjct: 240 VSNRIVRIFFLLSAMKCLGCSVIWH 264


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 643 SKWFFACICICQFTSYFYK 587
           +KWFF C+C      +F K
Sbjct: 14  TKWFFCCVCTILTMPFFKK 32


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 333 FHNCWSVFXNSLKCLQVELKLSISW 259
           FHN WS    S+  L V L L   W
Sbjct: 224 FHNVWSSSSTSVPILSVVLALFFIW 248


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 404 WLEEI-KGFYYIKNYVFSELKTMSPTHY 484
           W+ ++ KG YY  +Y+FS LK     +Y
Sbjct: 559 WVSKVFKGTYYRLSYLFSSLKYTLAENY 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,225
Number of Sequences: 5004
Number of extensions: 44830
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)