Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O23
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    35   0.041
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z...    31   0.88 
At4g04690.1 68417.m00685 F-box family protein (FBX15) contains F...    29   2.0  
At3g08750.1 68416.m01017 F-box family protein contains F-box dom...    29   2.0  
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00...    28   6.2  

>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 212 SLPXEVISIILKNNDCQEILNFSSTCKHFNELXNTDQQLWKEKL 343
           SLP ++I  IL+    + +L F STCK + EL + D++   + L
Sbjct: 4   SLPFDLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHL 47


>At1g51550.1 68414.m05802 F-box family protein similar to F-box
           ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
           [Arabidopsis thaliana]
          Length = 478

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 206 IYSLPXEVISIILKNNDCQEILNFSSTCKHFNELXNTDQQLWKEKL-KELIPDAAFVVXE 382
           I +LP + +  IL       IL+FS TCK +  L  +D  LW+    +E  P +   +  
Sbjct: 21  IINLPDDHLLTILLLLPVDSILSFSMTCKRYKSLACSD-SLWEALCEREWGPTSVDALKL 79

Query: 383 SDCHDG-DWL 409
           S   DG  W+
Sbjct: 80  SSLRDGFSWM 89


>At4g04690.1 68417.m00685 F-box family protein (FBX15) contains
           F-box domain PF:00646
          Length = 378

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 212 SLPXEVISIILKNNDCQEILNFSSTCKHF 298
           SLP E++  ILK    + +  F STCK +
Sbjct: 10  SLPFELVEEILKKTPAESLNRFKSTCKQW 38


>At3g08750.1 68416.m01017 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 200 LSIYSLPXEVISIILKNNDCQEILNFSSTCKHFNELXNTDQQLWKEKLKELIPD 361
           L + SLP E+I  IL     + ++ F STCK +  L  T+++     L    P+
Sbjct: 7   LLLPSLPFELIEEILYKIPAESLIRFKSTCKKWYNLI-TEKRFMYNHLDHYSPE 59


>At5g36200.1 68418.m04364 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (pir||T00841)
          Length = 471

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 200 LSIYSLPXEVISIILKNNDCQEILNFSSTCKHFNELXN 313
           +++  LP +++  I+     + I   SSTCK++N L N
Sbjct: 1   MAMSDLPNDLVEEIISRVPVKSIRAVSSTCKNWNTLSN 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,261
Number of Sequences: 28952
Number of extensions: 212563
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)