Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O20
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    28   1.3  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   4.1  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.1  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   7.1  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   7.1  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   9.4  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 207 PDAKPXELNVIQVEAMSLQEAVKLPVAVLKVGESXHVRLDIEFPDAPVTFTLVQGFGAST 386
           P +KP + N +  +   LQ + KLP   L VGE       I+ P+  V+ T      +S 
Sbjct: 355 PVSKPSKPNTLTEDEKPLQ-STKLPGNSLTVGELYQEPKSIQLPELSVSRTTYSAQSSSV 413

Query: 387 LN 392
            N
Sbjct: 414 KN 415


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 LNVIQVEAMSLQ--EAVKLPVAVLKVGESXHVRLDIEFPDAPVTFTLVQGFG 377
           LN IQ   +SL+  +   +   V+ +    HVR++  F +  ++  LV+G G
Sbjct: 556 LNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 361 RVNV-TGASGNSMSRRTCXDSPTFNTATGSFTASCSDMAST 242
           R NV T ++ N + +     +PT +T TGS ++  S M +T
Sbjct: 57  RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
 Frame = -2

Query: 409 QGDGVQLSVL--APXP*TRVNVTGA--SGNSMSRRTCXDSP----TFNTATGSFTASCSD 254
           +  GV L  L  AP P  ++NV G+  S ++ S       P    T N++TGSFT   + 
Sbjct: 251 KSSGVNLMPLSNAPSPPKQMNVVGSLPSSSNTSPNHLASVPNRGLTSNSSTGSFTKYTNG 310

Query: 253 MASTCITFNSXGLASGPNNA*RMTSL 176
            +++  + +S      P+ +   TSL
Sbjct: 311 SSNSLYSNSSMQTPYLPSKSNSSTSL 336


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 182 ELVAAWVFCFCLWIP 138
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 182 ELVAAWVFCFCLWIP 138
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 144 PEAKAEYPRSNKLVIRQALLGPDAKPXELNVIQVEAMSLQEAVKLPVAV 290
           P+ KA Y  +  LVI     G   KP   +  Q++  ++ E++ LP+ +
Sbjct: 104 PKLKALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVL 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,948
Number of Sequences: 5004
Number of extensions: 39823
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)