Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O20
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    31   0.53 
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      29   2.8  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    29   2.8  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    29   2.8  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    27   8.7  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   8.7  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 334 NSMSRRTCXDSPTFNTATGSFTASCSDMASTCITFNS 224
           N+  +RTC   P+  TA+ S TAS S   STC ++N+
Sbjct: 87  NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNA 120


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 589 WHSSWA-MQLCLWHYSTFSLFCPWVHLXHYXHP*TENHXL 473
           WHS+   +  CL  + TF+ FC  + + HY    T NH +
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLI 330


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 589 WHSSWA-MQLCLWHYSTFSLFCPWVHLXHYXHP*TENHXL 473
           WHS+   +  CL  + TF+ FC  + + HY    T NH +
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLI 330


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 589 WHSSWA-MQLCLWHYSTFSLFCPWVHLXHYXHP*TENHXL 473
           WHS+   +  CL  + TF+ FC  + + HY    T NH +
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLI 330


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 589 WHSSWA-MQLCLWHYSTFSLFCPWVHLXHYXHP*TENHXL 473
           WHS+   +  CL  + TF+ FC  + + HY    T NH +
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLI 330


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 589 WHSSWA-MQLCLWHYSTFSLFCPWVHLXHYXHP*TENHXL 473
           WHS+   +  CL  + TF+ FC  + + HY    T NH +
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLI 330


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 340 SGNSMSRRTCXDSPTFNTATGSFTAS-CSDMASTCITFNSXGLAS 209
           S NS S  +  DS +  ++T S T + C D  STC ++ + G  +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 70  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 186
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 70  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 186
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,744
Number of Sequences: 27780
Number of extensions: 238271
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)