Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O20
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14850.1 68415.m01687 expressed protein                             30   1.2  
At3g58050.1 68416.m06471 expressed protein                             28   4.7  
At4g33890.2 68417.m04809 expressed protein                             27   8.1  
At4g33890.1 68417.m04808 expressed protein                             27   8.1  

>At2g14850.1 68415.m01687 expressed protein
          Length = 291

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = +3

Query: 168 RSNKLVIRQALLGPDAKPXELNVIQVEAMSLQEAVKLPVAVLKVGESXHVRLDIEFPDAP 347
           RS K   R + LGP  KP  L     E+MS  +A +LP+ V+ V +   V      P   
Sbjct: 104 RSRKFRDRPSPLGPLGKPQSLTTTNDESMS--KAQRLPMEVVSVEDGEEVEQMTGSPSVQ 161

Query: 348 VTFTLVQGFGAS 383
               L    G S
Sbjct: 162 SRSPLTAPLGVS 173


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 108 TLSSSHQSETWDPEAKAEYPRSN 176
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +3

Query: 168 RSNKLVIRQALLGPDAKPXELNVIQVEAMS-LQEAVKL-------PVAVLKVGESXHV 317
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +3

Query: 168 RSNKLVIRQALLGPDAKPXELNVIQVEAMS-LQEAVKL-------PVAVLKVGESXHV 317
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,509,061
Number of Sequences: 28952
Number of extensions: 221152
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)