Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O19
(352 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 86 9e-18
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 27 3.2
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18) 27 3.2
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0) 27 4.3
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 27 4.3
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89) 27 5.7
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 5.7
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1) 26 7.5
SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62) 26 7.5
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 26 7.5
SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4) 26 7.5
SB_29029| Best HMM Match : C1_1 (HMM E-Value=1) 26 7.5
SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4) 26 7.5
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_5263| Best HMM Match : C1_1 (HMM E-Value=1) 26 7.5
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81) 26 9.9
SB_24002| Best HMM Match : Luteo_Vpg (HMM E-Value=3) 26 9.9
SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 85.8 bits (203), Expect = 9e-18
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +1
Query: 1 MGXIMKPGKVVLVLSGRYAGRKAIVXXNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKX 180
MG +K GKVVLVL GRYAG+KA++ NYD+G+SDKPYGHA VAG+ RYP + + GK
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 181 *NPQEVQDKAF 213
+ + K F
Sbjct: 61 RTAKRSKVKPF 71
Score = 72.9 bits (171), Expect = 7e-14
Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Frame = +2
Query: 149 PGKVHKRMGXNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKK 322
P KV KRMG + KRSK+KPFVKV NYNHLMPTRY+VD +K KD+ +DPA +KK
Sbjct: 50 PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 1.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 239 SDYSLQPSRKALSWTSCG 186
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.9 bits (59), Expect = 2.4
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +2
Query: 83 ITTKVPPTSRTGMLSSLVSTGTPGKVHKRMG-XNKIHKRSKIK-PFVKVVNYNHLMP-TR 253
++ VPPT+ +L G V RMG K+ + K+ P + +++Y P R
Sbjct: 1284 VSEPVPPTTIFSLLLDTDEKAFQGNVKTRMGLLTKLAEYFKVTIPDIHIISYKPEDPGIR 1343
Query: 254 YTVDFSFEKFSAKDLKDPAKRK 319
+T F F K PA K
Sbjct: 1344 FT--FGFSNVPTKPCDSPALAK 1363
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 348 KXTRVLKRSFLRFAGSFRSFALNFSKL 268
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 348 KXTRVLKRSFLRFAGSFRSFALNFSKL 268
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623
>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
Length = 366
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 348 KXTRVLKRSFLRFAGSFRSFALNFSKL 268
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVKNFSKV 86
>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 564
Score = 27.1 bits (57), Expect = 4.3
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = -1
Query: 280 FFKAEVNCITCWHQVIIVYNLHERLYLGPLVDFIXSHPLVHFAGGTCRYQRRKHARTACR 101
F A W + L ERLY +D + L+ FAG C R H +
Sbjct: 285 FHDANYQSAYTWGDFPVSVYLRERLYFEVSIDSHDPN-LIVFAGNCCSTATRDHDKAGRF 343
Query: 100 RY 95
RY
Sbjct: 344 RY 345
>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 348 KXTRVLKRSFLRFAGSFRSFALNFSKL 268
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVENFSKV 86
>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 137 STGTPGKVHKRMGXNKIHKRSKIKPFVKVVNYNHL 241
STG PG HKR G + + P+++ V+Y H+
Sbjct: 142 STGNPGLEHKRSGHSLV-----FLPYMEGVSYRHV 171
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 348 KXTRVLKRSFLRFAGSFRSFALNFSKL 268
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702
>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
Length = 724
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 327 RSFLRFAGSFRSFALNFSKL 268
++FL FA +RSF NFSK+
Sbjct: 6 QTFLGFASYYRSFVKNFSKV 25
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 98 PPTSRTGMLSSLVSTGTPGKVHKRMG 175
PPT+ T +L+++ ++G PG MG
Sbjct: 460 PPTTMTTILTTIATSGPPGGAPSPMG 485
>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 232 IVYNLHERLYLGPLVDFIXSHPLVHFAGGTCRYQRRKHART 110
++ ++ERL LG + DF+ S P F T R+ H+ T
Sbjct: 644 VLSKVYERLVLGQMSDFVSSGP-DSFLKDTVSAYRKGHSTT 683
>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 820
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 188 GFYXFPSSCALCRGYLSIPATKACPYGLSEVPSS 87
G+ PS+ GY +P+ K G EVPSS
Sbjct: 332 GYTGVPSNKKSGTGYTGVPSNKKPGTGYKEVPSS 365
>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1386
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 340 SRVETQLLTFCRVFQVFCAEFFKAEVNCITC 248
+R L F + + C ++FK +NC+ C
Sbjct: 215 ARERAYLCNFLAIVFLVCGQYFKDYLNCLGC 245
>SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)
Length = 256
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 340 SRVETQLLTFCRVFQVFCAEFFKAEVNCITC 248
+R L F + + C ++FK +NC+ C
Sbjct: 215 ARERAYLCNFLAIVFLVCGQYFKDYLNCLGC 245
>SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62)
Length = 450
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 108 AVRACFRRWYRQVPPAKCTRGWEXIKST 191
A+ CFR R +P A + GW ++ T
Sbjct: 384 AISFCFRGTPRAIPNASISTGWMTVRVT 411
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 167 RMGXNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLK 301
R+ K+ K SK+ V YN L R +FS E S KD K
Sbjct: 442 RLFTQKLEKLSKLLETEFVEAYNQLEGDRPNFEFSLEIASQKDDK 486
>SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
Length = 118
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 37 VLSGRYAGRKAIVXXNYDEGTSDKPYGHA 123
VL+ Y A V N++EG SD GH+
Sbjct: 71 VLNPAYRTESAEVDSNFNEGASDLSTGHS 99
>SB_29029| Best HMM Match : C1_1 (HMM E-Value=1)
Length = 250
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 340 SRVETQLLTFCRVFQVFCAEFFKAEVNCITC 248
+R L F + + C ++FK +NC+ C
Sbjct: 209 ARERAYLCNFLAIVFLVCGQYFKDYLNCLGC 239
>SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
Length = 118
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 37 VLSGRYAGRKAIVXXNYDEGTSDKPYGHA 123
VL+ Y A V N++EG SD GH+
Sbjct: 71 VLNPAYRTESAEVDSNFNEGASDLSTGHS 99
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 68 LSXSXITTKVPPTSRTGMLSSLVSTGTPGKVHKRMGXNKIHKRSKIKPFVKV 223
L+ +TT P G + S + T TPG++H +RSK P + V
Sbjct: 824 LNTRVVTT---PVVSPGFMESTLGT-TPGEIHHHHHFKNTGRRSKSSPEIPV 871
>SB_5263| Best HMM Match : C1_1 (HMM E-Value=1)
Length = 407
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 340 SRVETQLLTFCRVFQVFCAEFFKAEVNCITC 248
+R L F + + C ++FK +NC+ C
Sbjct: 321 ARERAYLCNFLAIVFLVCGQYFKDYLNCLGC 351
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 206 KPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKD 304
K +++VN N L P T+D++ +K D K+
Sbjct: 1063 KTRLQIVNTNILWPNALTIDYTIDKIWWADAKE 1095
>SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81)
Length = 388
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 266 SQLYNVLASSDYSLQPSRKALSWTSCGFYXFPSSCALCR 150
S L+N + SS + + S +C FY PSS C+
Sbjct: 114 SSLFNRIPSSLLACEFDGIPSSLVACEFYGIPSSLVACK 152
>SB_24002| Best HMM Match : Luteo_Vpg (HMM E-Value=3)
Length = 71
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 50 GTRVARLSXSXITTKVPPTSRTGMLSSLVSTGTPGKVHKRM 172
G + +S + +TK PP++ ++ +T K H R+
Sbjct: 18 GRSLLEISSATSSTKSPPSATKSTSTATTTTSATSKTHSRV 58
>SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 269 SFEKFSAKDLKDPAKRKKLRFNT 337
+FEK A+ + P K K RFNT
Sbjct: 582 NFEKLEARQINPPFKPKIRRFNT 604
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,574,880
Number of Sequences: 59808
Number of extensions: 201904
Number of successful extensions: 505
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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