Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O19
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 84 2e-17
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 84 2e-17
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 30 0.54
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 28 1.6
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 3.8
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 3.8
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 3.8
AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical ... 27 3.8
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 3.8
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 3.8
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 3.8
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 27 5.0
U23511-9|AAC46796.1| 140|Caenorhabditis elegans Hypothetical pr... 27 5.0
U23511-8|AAU20849.1| 167|Caenorhabditis elegans Hypothetical pr... 27 5.0
U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical p... 26 6.6
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 26 8.7
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 26 8.7
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/59 (64%), Positives = 45/59 (76%)
Frame = +1
Query: 1 MGXIMKPGKVVLVLSGRYAGRKAIVXXNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGK 177
MG IMKPGKVVLVL G+YAGRKA+V DEG SD+ Y HA +AGIDRYP + ++ GK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGK 59
Score = 73.7 bits (173), Expect = 3e-14
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Frame = +2
Query: 149 PGKVHKRMGXNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 322
P KV K MG KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 323 LRFNTRVXFE 352
+ FE
Sbjct: 110 ALVEVKSKFE 119
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/59 (64%), Positives = 45/59 (76%)
Frame = +1
Query: 1 MGXIMKPGKVVLVLSGRYAGRKAIVXXNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGK 177
MG IMKPGKVVLVL G+YAGRKA+V DEG SD+ Y HA +AGIDRYP + ++ GK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGK 59
Score = 73.7 bits (173), Expect = 3e-14
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Frame = +2
Query: 149 PGKVHKRMGXNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 322
P KV K MG KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 323 LRFNTRVXFE 352
+ FE
Sbjct: 110 ALVEVKSKFE 119
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 31 VLVLSGRYAGRKAIVXXNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKX*NPQEVQDKA 210
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 211 FREGCKL 231
R+G L
Sbjct: 231 IRQGNSL 237
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 31 VLVLSGRYAGRKAIVXXNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKX*NPQEVQDKA 210
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 211 FREGCKL 231
R+G L
Sbjct: 231 IRQGNSL 237
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 31 VLVLSGRYAGRKAIVXXNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKX*NPQEVQDKA 210
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 211 FREGCKL 231
R+G L
Sbjct: 231 IRQGNSL 237
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 200 WTSCGFYX-FPSSCALCRGYLSIPAT 126
W +C F+ P SC LC G ++ PAT
Sbjct: 112 WDNCPFFKNCPLSCGLCTGNVTTPAT 137
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 110 RTGMLSSLVSTGTPGKVHKRMGXNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 280
RT +L + + G+ H N+ KR KI + YNHL+P T+D+S K
Sbjct: 377 RTVLLDANQAGVERGQNHVATHLNRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 351 SKXTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 256
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 351 SKXTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 256
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 351 SKXTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 256
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
>AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical
protein C29G2.6 protein.
Length = 202
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 248 LASSDYSLQPSRKALSWTSCGFYXFPSSCALCRGYLSIPATKACPYG 108
+A S+ + K L C F+ F SC C G+++ + C G
Sbjct: 117 VAESNQDIFQINKCLR-QDCAFHCFDGSCPKCSGFITRVFNQMCAAG 162
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 179 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 280
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 179 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 280
NK KR KI K YNHL+P T+D+S K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 179 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 280
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 261 LTSALKNSAQKT*KTLQNVRSCVSTREYXL 350
L AL+NSAQK L ++ + VST Y L
Sbjct: 651 LFDALQNSAQKCGVALSDLMTAVSTSSYSL 680
>U23511-9|AAC46796.1| 140|Caenorhabditis elegans Hypothetical
protein C32D5.8a protein.
Length = 140
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 248 LASSDYSLQPSRKALSWTSCGFYXFPSSCALCRGYLSI 135
L D +L + +AL+ + GFY C CRG+ I
Sbjct: 9 LEKRDKTLVDATEALAGKAVGFYFSAHWCPPCRGFTPI 46
>U23511-8|AAU20849.1| 167|Caenorhabditis elegans Hypothetical
protein C32D5.8b protein.
Length = 167
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 248 LASSDYSLQPSRKALSWTSCGFYXFPSSCALCRGYLSI 135
L D +L + +AL+ + GFY C CRG+ I
Sbjct: 36 LEKRDKTLVDATEALAGKAVGFYFSAHWCPPCRGFTPI 73
>U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical
protein T20D4.7 protein.
Length = 155
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 248 LASSDYSLQPSRKALSWTSCGFYXFPSSCALCRGYLSI 135
L D SL + +AL+ GFY C CRG+ I
Sbjct: 23 LEKLDKSLVDATEALAGKLVGFYFSAHWCPPCRGFTPI 60
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 248 LASSDYSLQPSRKALSWTSCGFY--XFPSSC 162
LAS++Y + P + A ++ +CG FP +C
Sbjct: 195 LASANYGMCPCQHAFAFPACGMETGFFPGTC 225
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 295 VFCAEFFKAEVNCITCWHQVIIVYNLHER 209
V + +A+ + ITCW + + ++ H R
Sbjct: 1320 VLIQDMIRADDHMITCWGRTVAIFVFHAR 1348
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +1
Query: 13 MKPGKVVLVLSGRYAGRKAI 72
+ PG V++VL+GR+ G++ +
Sbjct: 71 LTPGTVLIVLAGRHKGKRVV 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,544,691
Number of Sequences: 27780
Number of extensions: 143840
Number of successful extensions: 440
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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