Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O14
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.58 
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    28   1.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   4.1  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.5  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 857

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 27/110 (24%), Positives = 44/110 (40%)
 Frame = +2

Query: 155  EASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMT 334
            EA Q+   V+P  P      +   G +VK      PT  K    V +D  P +   + + 
Sbjct: 690  EAGQLNEPVVPPLPPHDETQEPQVGGDVKATEHTQPT--KTPAIVIYDYSPEEENEIELV 747

Query: 335  DPDAPSRKEPTFREWHHWLVGNIQGQRXKLRRNFVPVRGLWTSGKDRPAQ 484
            + +     E     W  WL  N +GQ+     N+V + G   +  + PA+
Sbjct: 748  ENEQIQILEFVDDGW--WLGENSKGQQGLFPSNYVEITGPNETANNPPAE 795


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 98  LFQYIRVLTRAMSTVAKSFEASQVVPDV-IPKAPAALLQVKY 220
           LFQ + +LT   S  A ++  SQV+P + I  A  AL Q KY
Sbjct: 6   LFQSVGILTPCGSAGAIAYITSQVLPAILIGPADVALAQWKY 47


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -1

Query: 403 DVANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH*RLVFH-----LSWSQLITFF 239
           D  +  +   A+C F   + + +   +S++ S +R+ ++  + ++     L W Q I  +
Sbjct: 438 DYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRY 497

Query: 238 NFDSAWVFH 212
            FD+A +F+
Sbjct: 498 EFDNALIFY 506


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 578  FEIGTFVARSVSESRLVECELRWLF 504
            F +G FVARS+ +SR++  +   LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 176  DVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDE 280
            D+I K     L++ +P G  +     LTP  VK E
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE 1028


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 420 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 575
           N+G    QY G   P+ TG  +     + QP +  F +P+ T     +   F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 218 YPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQY 316
           YP+GV    G+E TP         ++  E G++
Sbjct: 67  YPTGVTESYGDEYTPVDTASSGINQYSTEKGKF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,390
Number of Sequences: 5004
Number of extensions: 59079
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)