Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O14
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05) 38 0.005
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05) 33 0.27
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 3.3
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 28 5.7
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 28 7.6
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 28 7.6
>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
Length = 314
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +3
Query: 393 LATSRANXVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL-TFDEPRLTNTSSDKRA 569
L + + V++G L +Y+ PP+ TG HRY F L +Q +L + P T S R+
Sbjct: 144 LVNIQGSRVSNGTVLCEYLPPIPPQGTGFHRYTFCLLRQEQQLKPYTLP--TFRSLTDRS 201
Query: 570 NFKIAEFAXKYNLGDPIAGNFYEAQYD 650
A + + P+ F++A +D
Sbjct: 202 ISTSALISKVQDRLTPVGLGFFQASWD 228
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 191 APAALLQVKYPSGVEVKEGNELTPTQ 268
+P L ++Y SG +V GN LTP+Q
Sbjct: 92 SPCVNLDIRYESGAKVHHGNFLTPSQ 117
>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
Length = 115
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 435 LSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAXKYNL 608
L Y PP +GLHRY + +Q K+ P + +R +F EFA K+NL
Sbjct: 52 LKSYRPPSPPSGSGLHRYKYYALEQTGKV---RP----SPISERRSFDAQEFAAKHNL 102
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 335 DPDAPSRKEPTFREWHHWLVGNIQGQRXKLRRNFVPVRGLWTSGKD 472
DPDAPS +R W H+L NI R + SG D
Sbjct: 4 DPDAPSPIRHQYRSWLHYLKVNIPSDELAQRLDIQSGMDTIQSGMD 49
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +3
Query: 432 TLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAXKYNLG 611
T+ + S PE+ L + +Q S+L + S D+R K+ E + + +G
Sbjct: 726 TVDSSLTSSEPEERDLKAELAAWTRQTSQLPLPAEGIRTCSLDRRRGKKVFEMSSSHKIG 785
Query: 612 DPIAGNFYEAQYD 650
AG+F + D
Sbjct: 786 RYSAGDFPVQEVD 798
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 146 KSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW 295
+SFE P V +AP+ L+++ + +E + + K +P +KW
Sbjct: 2919 RSFEVDVTAPKVKGEAPSFSLELRPIAAIEEFDSKLICHVSGKPKPQIKW 2968
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Frame = +2
Query: 110 IRVLTRAMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQ--VKDEP 283
I V + T A A V V PK P A++Q K K GN L ++
Sbjct: 527 ITVDSEKQKTAATKASAPFVFTAVQPK-PEAVVQTKNCRSSVRKSGNWLDTISKSLQARK 585
Query: 284 SVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWL 391
K E + PDAP R++ + R+ +WL
Sbjct: 586 EAKCKEENFEGLREMFATPDAPQRQKKSTRKSGNWL 621
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Frame = +2
Query: 209 QVKYPSGVEVKEGNELTPTQVKDEPSVKWD------AEPGQY--YTLAMTDPDAPSRKEP 364
Q+K GV K L+ TQ+ SV+WD A+PG + + +TD + +
Sbjct: 123 QIKALPGVRAKP---LSSTQI----SVEWDSLQPLTADPGDLISHKIILTDKETGDVTQR 175
Query: 365 TFREWHHWL-VGNIQ 406
T W +WL V N+Q
Sbjct: 176 TTNSWTNWLVVSNLQ 190
>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 581 NFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSRAHVL 441
N ++G + + E R +L W + + ++VQ C R+ HVL
Sbjct: 92 NGDLGALIKKHKREKRYTAEDLVWKLLYQLVLAVQECHRRKDGGHVL 138
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 333 PTLMRRPVKNPHFANGTTGWLATSRANXVNSGETLSQYVGSGPPEKT 473
P +RPV P ++ GTT + ++ + G T Q PP T
Sbjct: 54 PPQTQRPVVQPAYSAGTTAYAQSAPSQGSGYGYTARQQDAPPPPPPT 100
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 420 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRAN 572
NS T SQ V S PP + ++ L K PS+ +F R+ +++ ++ N
Sbjct: 294 NSRFTTSQAVQSPPPLPSSYREFMVQLQKLPSEGSFPPNRVAPSATMQQRN 344
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,268,230
Number of Sequences: 59808
Number of extensions: 489145
Number of successful extensions: 1445
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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