Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O13
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.015
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.14
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.19
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.25
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 30 0.33
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.76
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.76
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 1.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 1.8
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 1.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 2.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.3
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 2.3
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 3.1
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 26 4.0
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 26 5.3
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 7.1
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 9.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 9.3
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 9.3
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 25 9.3
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.015
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +2
Query: 134 DAAVDKKEVAPEEVTSTEPKESPVKKSPAXKVE---AAESNGKENGTDEAPEDSPAENGD 304
D + K + + +S EP + VKK K + ++ES + + ++ S +E+
Sbjct: 48 DVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSS 107
Query: 305 AEXSNDASENGDATXKKETGVK 370
+E + +SE+ + ++E VK
Sbjct: 108 SESESSSSESSSSESEEEVIVK 129
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 146 DKKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEXSND- 322
+KKE + + + + ES + S + E E K T+E E S + D+E S+D
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSDS 214
Query: 323 ASENGDATXKKET 361
+SE+GD+ ++
Sbjct: 215 SSESGDSDSSSDS 227
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/67 (20%), Positives = 32/67 (47%)
Frame = +2
Query: 131 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAE 310
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 311 XSNDASE 331
+E
Sbjct: 236 EKKRKAE 242
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +2
Query: 167 EEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEXSNDASENGDAT 346
E +S+E +S S + +++ + + + ++ +DS +++ D+E S +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSE-SESSSEDSDST 302
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.19
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 149 KKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSP-AENGDAE 310
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ E
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVE 538
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 230 EAAESNGKENGTDEAPEDSPAENGDAEXSNDASENGD 340
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 152 KEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAEN-GDAEXSNDAS 328
++V ++TS EPK + KSP K + ++ T++ DS +N + S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 329 ENGDATXKKET 361
+ AT T
Sbjct: 1032 DTSTATVAATT 1042
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 0.76
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 170 EVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEXSNDASENG 337
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 197 SPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEXSNDASENGDA 343
+P+K+ PA ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 98 SFF*LYPXQQLADAAVDKKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAP 277
S F YP Q + V+K+ PEE + E K K+P + ES KE T +
Sbjct: 199 SEFISYPIQLVVTREVEKE--VPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVK 256
Query: 278 E 280
E
Sbjct: 257 E 257
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 209 KSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEXSNDASENGDATXKKETGVKR 373
K P+ K + S+ +NG+D DS + N SN +EN +A +K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +2
Query: 110 LYPXQQLADAAVDKKEVAPEEVTSTEPKES---PVKKSPAXKVEAAESNGKENGTDEAPE 280
+Y Q +D ++ E T+ +P E K+ K + +E+ + G D+ E
Sbjct: 145 IYLNGQTSDGGYAAPAISRAESTAIQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVE 204
Query: 281 DSPAENGDAEXSNDASENGD 340
+ ++ D + D E+ +
Sbjct: 205 EEDDDDDDEDEDEDEDEDNN 224
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +2
Query: 179 STEPKESPVKKSPAXKVE-----AAESNGKENGTDEAPEDSPAENGDAEXSN 319
S P++SPV+ V+ +ESN K +GT+ + +P NG+ E +N
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGNEEVNN 225
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 125 QLADAAVDKKEVAPEEVT-STEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAEN 298
++A V+ KEV +EV+ +TEP PV + ++E E +PE EN
Sbjct: 239 EVATDQVESKEVKKKEVSETTEPTAPPVTVAEVLEIEDKVPKVDEVEEVHSPEAKVTEN 297
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 236 AESNGKENGTDEAPEDSPAENGDAEXSNDASENGDATXKKETGVKRKSVAL 388
+ES ++ DE E+ EN D D +EN + + E G S A+
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDE--LRSENGSPNPSAAV 289
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 155 EVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDE-APEDSPAENGDAEXSNDASE 331
++ PE+ + + PVKK P+ K + A++N E DE + E+ E+ + +
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKS 116
Query: 332 NGDATXK 352
+ A+ K
Sbjct: 117 SKKASPK 123
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 615 RAQPFIV*GYQYGCNTFVGAGYVDVS*TXMGIDALQ 508
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +2
Query: 122 QQLADAAVDKKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAEN 298
+Q+A+ + +AP + ++ + + VK A +E + K+NGT+ + ++ E+
Sbjct: 1271 KQVAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGTNISDANNKNES 1329
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 448 GFLRYFCLXXGSGLFCCFFIKSHRFPLHTSLFLXCGITVLRCIVAXFGITIFSRRIFWGF 269
GF++ F + L F I F L T + L I + F + R F+ F
Sbjct: 22 GFIKLFSFSFVNALLALFIIV---FGLGT-IGLEKEIPPIAIKYGSFMFSFLGRGFFYAF 77
Query: 268 IGTILFAIT-FCSF 230
+GT+LF+ + F SF
Sbjct: 78 MGTLLFSYSGFTSF 91
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 5.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 409 LFCCFFIKSHRFPLHTSLFL 350
L CC++I S++ H+S+F+
Sbjct: 464 LLCCYYIYSYKLIPHSSIFV 483
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/74 (25%), Positives = 26/74 (35%)
Frame = +2
Query: 161 APEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEXSNDASENGD 340
A EE + SP + S K + E + ENG P DA + S
Sbjct: 144 ADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENGNFIRKNYDPESQYDAWLNGSVSNKKS 203
Query: 341 ATXKKETGVKRKSV 382
+E KRK +
Sbjct: 204 IAAAREAEQKRKEM 217
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +2
Query: 164 PEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAE---NGDAEXSND-ASE 331
P E +TE + + +S + ++ S + D DSP + N + +D SE
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410
Query: 332 NG 337
NG
Sbjct: 411 NG 412
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 1 RFXTSRFSLQLSVVFPLCVTRVLNFLF---TFQRYFIFLTLPLXT 126
R +RF +L V+ L V + NFLF +++ FLT+ T
Sbjct: 742 RLAQARFISELCVIHMLDVRAITNFLFHLLPLEKFESFLTMKAST 786
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 230 EAAESNGKENGTDEAPEDSPAENGDAEXSNDASENGDATXKKETGVKRKSVALD 391
+A S+ +E ++E ED+ E+G +E + E+G+ + E +++ D
Sbjct: 954 DADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERKARQEDAKHD 1007
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 158 VAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPA 292
VAP +TS + V KS VE+ +++ T PED P+
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPS 331
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 10 TSRFSLQLSVVFPLCVTRVLNFLFTFQ 90
TS LQL FP V V++FL F+
Sbjct: 329 TSNSPLQLRASFPAFVNAVIHFLLEFK 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,651
Number of Sequences: 5004
Number of extensions: 33783
Number of successful extensions: 147
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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