Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O11
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0) 185 2e-47
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 30 1.1
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 1.8
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 29 1.8
SB_29977| Best HMM Match : IL8 (HMM E-Value=1) 29 3.2
SB_12457| Best HMM Match : zf-C2H2 (HMM E-Value=0.29) 29 3.2
SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 28 5.6
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
Length = 166
Score = 185 bits (450), Expect = 2e-47
Identities = 95/160 (59%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Frame = +3
Query: 33 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSXGYVKEQF 212
ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++ +PNL VIKA+QSLKS GYV+E+F
Sbjct: 1 MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60
Query: 213 AWRHFYWYLTNXGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGPVGR--PDAPARSAE 383
W+H+YW LTN GI YLR FLHLP EIVPATL+R V R ET R P G P P +
Sbjct: 61 CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGD 120
Query: 384 -DRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 500
DR +YRR P PGV + K G G EF+ G+GRG
Sbjct: 121 RDRESYRRGP-PPGV---EGKGGAGSGFKP-EFRQGFGRG 155
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 402 RTPAAPGVAPHDK-KADVGPGS 464
+TPA PG+AP D K VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 435 HEVQHQGQQEYACMQICPQQSGLGHQDDLQGH 340
HE+ H GQ+ Y C + +QS G QD L H
Sbjct: 1158 HELLHSGQRPYRCTEPECEQS-FGRQDHLTDH 1188
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 411 AAPGVAPHDKKADVGP 458
A PG+APHDKK+ GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560
>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
Length = 521
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2
Query: 407 STPVCRSVLSRAGWGIRTTYRATAY 333
S+PVC++V GW ++TT++AT +
Sbjct: 411 SSPVCQAV---QGWALKTTHKATRF 432
>SB_12457| Best HMM Match : zf-C2H2 (HMM E-Value=0.29)
Length = 327
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2
Query: 407 STPVCRSVLSRAGWGIRTTYRATAY 333
S+PVC++V GW ++TT++AT +
Sbjct: 201 SSPVCQAV---QGWALKTTHKATRF 222
>SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 495 VHSLP*IQDQLSLDQHQPFYHEVQHQGQQEYACMQICPQQSGLGHQD 355
VH P + D + + QH +V HQ C ICPQ GL QD
Sbjct: 208 VHQHPGLVDPV-VHQHPGLVDQVVHQ--HPGPCDPICPQHPGLVDQD 251
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 339 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 458
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +3
Query: 276 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 422
HL P ++ + S+ RGP GRP P R + R P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 339 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 458
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 351 GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 464
G P+ + S+E R RT AP P K PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,181,273
Number of Sequences: 59808
Number of extensions: 281179
Number of successful extensions: 1001
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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