Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O11
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   138   3e-33
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   137   4e-33
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   131   3e-31
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   8.0  
At1g16370.1 68414.m01958 transporter-related low similarity to o...    27   8.0  
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    27   8.0  

>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  138 bits (333), Expect = 3e-33
 Identities = 77/158 (48%), Positives = 97/158 (61%), Gaps = 3/158 (1%)
 Frame = +3

Query: 33  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSXGYVKEQF 212
           M++ + NR  I +YLFKEGV  AKKD++ PKH  L  +PNLQVIK MQS KS  YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHP-LIDVPNLQVIKLMQSFKSKEYVRETF 59

Query: 213 AWRHFYWYLTNXGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAED 386
           AW H+YW+LTN GIE+LR +L+LP ++VPATLK+S +       GP G R   P RS  D
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119

Query: 387 RSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 497
           R  +  R     G    D+K    P      F+GG GR
Sbjct: 120 RPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  137 bits (332), Expect = 4e-33
 Identities = 76/163 (46%), Positives = 98/163 (60%), Gaps = 6/163 (3%)
 Frame = +3

Query: 33  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSXGYVKEQF 212
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +  +PNLQVIK MQS KS  YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 213 AWRHFYWYLTNXGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS---- 377
           AW H+YW+LTN GI++LR +L+LP EIVPATLK+  +      G  G RP  P R     
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120

Query: 378 -AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGR 503
              DR  YR  P + G   +  KA   P      F+GG G  R
Sbjct: 121 RFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGGAGGAR 160


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  131 bits (317), Expect = 3e-31
 Identities = 77/167 (46%), Positives = 97/167 (58%), Gaps = 11/167 (6%)
 Frame = +3

Query: 33  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSXGYVKEQF 212
           M++ + NR  I +YLFKEGV  AKKD++  KH  L  +PNLQVIK MQS KS  YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHP-LIDVPNLQVIKLMQSFKSKEYVRETF 59

Query: 213 AWRHFYWYLTNXGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA-- 380
           AW H+YW+LTN GIE+LR +L+LP ++VPATLK+S +       GP G R   P      
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119

Query: 381 ----EDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 500
                DR  YR  P A G    +K     P      F+G   G+GRG
Sbjct: 120 RPRFGDRDGYRAGPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 125 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 39
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


>At1g16370.1 68414.m01958 transporter-related low similarity to
           organic cation transporter OCTN1 from [Homo sapiens]
           GI:2605501, [Mus musculus] GI:4126605, [Rattus
           norvegicus] GI:5679326; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 521

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 144 IPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNXGIEYLRIFLHL 281
           IP    +    SL    ++ +  +WR+ Y Y +   + Y  IFL+L
Sbjct: 215 IPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAVFYC-IFLYL 259


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 471 LEFKGGYGRGRPAS*FKQXKNL 536
           L+F+GGY  G   S FK  KNL
Sbjct: 178 LDFRGGYFEGSVPSSFKNLKNL 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,445
Number of Sequences: 28952
Number of extensions: 189771
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)