Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O08
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 75 9e-15
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 42 8e-05
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 37 0.003
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 36 0.004
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 36 0.007
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 34 0.016
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 33 0.048
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 4.1
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 4.1
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 9.5
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 25 9.5
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 74.9 bits (176), Expect = 9e-15
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKN-SKTADREEKRT 300
KM +N+ + V +D RTF+G AFD MNL+L DC+E+ IK +N + EEKR
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64
Query: 301 LGFVLLRGENIVSLTI 348
LG V+LRGE IVSL++
Sbjct: 65 LGLVILRGEFIVSLSV 80
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 41.9 bits (94), Expect = 8e-05
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +1
Query: 148 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLGFVLLRGE 327
RV+VI D R +G+ K FD NLIL D F +I S + E LG LLRGE
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDM----ETIPLGVYLLRGE 63
Query: 328 NI 333
N+
Sbjct: 64 NV 65
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 151 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEK---RTLGFVLLR 321
V V L+ R G A+D+H+N++LGD EE I D+ K + + +R
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81
Query: 322 GENIV 336
G++++
Sbjct: 82 GDSVI 86
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
+ ++ + R++ R G K FD+ MNL+L D EE + T R LG
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLG 84
Query: 307 FVLLRGENIV 336
V++RG +V
Sbjct: 85 LVVVRGTTLV 94
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
+QQH + + Q G + FD+ MN++L D ++ +KN+ KR LG
Sbjct: 20 LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDA---VQVDAKNN-------KRELG 69
Query: 307 FVLLRGENI 333
+LL+G+NI
Sbjct: 70 RILLKGDNI 78
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTAD 282
MTI + + I + VI++ R F GT FD ++N++L D E+ + K ++
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 32.7 bits (71), Expect = 0.048
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Frame = +1
Query: 100 KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNS- 270
+ + G + +QQ + +V++ ++++ + KAFD+H N++L + +E K + +
Sbjct: 24 EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTAS 83
Query: 271 --KTADREEKRTLGFVLLRGENIV 336
K + R + + LRG+ +V
Sbjct: 84 GKKGKAINKDRFISKMFLRGDGVV 107
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = -1
Query: 619 PCQEELPSXLEEGHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLR 452
P ++ELP+ L P G LAF +++ V + + V + A+L + +L + ++LR
Sbjct: 329 PLEKELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTI-AELRERKILR 383
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 586 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 419
+GH SW + F+ + D ++ + V +LLLW D + RP +Y + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +1
Query: 148 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLGFV 312
+V +QD ++ FK+ K + E F +I NS D+ + FV
Sbjct: 231 KVITSIQDLEDYMVVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFV 285
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKN 267
M N + + I +V + L + G D +MNL L EE+ K N
Sbjct: 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTN 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,699
Number of Sequences: 5004
Number of extensions: 33113
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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