Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O08
(655 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L02919-1|AAA28858.1| 199|Drosophila melanogaster ribonucleoprot... 163 2e-40
AY061171-1|AAL28719.1| 199|Drosophila melanogaster LD14049p pro... 163 2e-40
AE014134-1881|AAF52947.1| 199|Drosophila melanogaster CG5352-PA... 163 2e-40
BT023632-1|AAY85032.1| 95|Drosophila melanogaster IP05684p pro... 51 2e-06
AE014296-355|AAF47567.1| 95|Drosophila melanogaster CG2021-PA ... 51 2e-06
BT022486-1|AAY54902.1| 121|Drosophila melanogaster IP06106p pro... 45 8e-05
AE014134-505|AAN10396.1| 121|Drosophila melanogaster CG31950-PA... 45 8e-05
BT001552-1|AAN71307.1| 103|Drosophila melanogaster RE11655p pro... 43 3e-04
AE014297-3433|AAN13967.1| 103|Drosophila melanogaster CG31184-P... 43 3e-04
BT025925-1|ABG02169.1| 287|Drosophila melanogaster IP12320p pro... 37 0.021
AY113637-1|AAM29642.1| 110|Drosophila melanogaster RH73529p pro... 37 0.021
AY113521-1|AAM29526.1| 91|Drosophila melanogaster RE60135p pro... 37 0.021
AE014296-1060|AAF50703.1| 91|Drosophila melanogaster CG6610-PA... 37 0.021
AE014134-2763|AAF53562.1| 110|Drosophila melanogaster CG13277-P... 37 0.021
AY070698-1|AAL48169.1| 76|Drosophila melanogaster RH35475p pro... 34 0.15
AE014298-2437|AAF48634.1| 76|Drosophila melanogaster CG9742-PA... 34 0.15
BT003597-1|AAO39600.1| 94|Drosophila melanogaster GM19936p pro... 33 0.26
AE014134-1360|AAF52576.1| 94|Drosophila melanogaster CG18591-P... 33 0.26
AY069315-1|AAL39460.1| 119|Drosophila melanogaster LD03002p pro... 33 0.34
AE014297-442|AAF54135.1| 119|Drosophila melanogaster CG1249-PA ... 33 0.34
AE013599-3518|AAN16119.1| 281|Drosophila melanogaster CG32834-P... 31 1.0
AY119189-1|AAM51049.1| 256|Drosophila melanogaster SD11312p pro... 25 2.5
AE013599-936|AAF58894.1| 256|Drosophila melanogaster CG12924-PA... 25 2.5
BT023954-1|ABB36458.1| 891|Drosophila melanogaster AT29009p pro... 28 9.6
AE014298-1586|ABI30977.1| 466|Drosophila melanogaster CG34143-P... 28 9.6
AE014298-1585|AAF48021.2| 553|Drosophila melanogaster CG34143-P... 28 9.6
>L02919-1|AAA28858.1| 199|Drosophila melanogaster ribonucleoprotein
protein.
Length = 199
Score = 163 bits (395), Expect = 2e-40
Identities = 85/146 (58%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTAD 282
MTIGKNNKM QH+NYRVR++LQDSRTFIGTFKAFDKHMNLILGDCEEF KI+SKNSK +
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 456
REEKR LGFVLLRGENIVSLT+
Sbjct: 61 REEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPINLSA 120
Query: 457 XXXXXXXXXRGVGGPSQQHMAPGNRG 534
RGVGGP+QQHMAP RG
Sbjct: 121 VPAGLQGPVRGVGGPAQQHMAPMGRG 146
>AY061171-1|AAL28719.1| 199|Drosophila melanogaster LD14049p
protein.
Length = 199
Score = 163 bits (395), Expect = 2e-40
Identities = 85/146 (58%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTAD 282
MTIGKNNKM QH+NYRVR++LQDSRTFIGTFKAFDKHMNLILGDCEEF KI+SKNSK +
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 456
REEKR LGFVLLRGENIVSLT+
Sbjct: 61 REEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPINLSA 120
Query: 457 XXXXXXXXXRGVGGPSQQHMAPGNRG 534
RGVGGP+QQHMAP RG
Sbjct: 121 VPAGLQGPVRGVGGPAQQHMAPMGRG 146
>AE014134-1881|AAF52947.1| 199|Drosophila melanogaster CG5352-PA
protein.
Length = 199
Score = 163 bits (395), Expect = 2e-40
Identities = 85/146 (58%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTAD 282
MTIGKNNKM QH+NYRVR++LQDSRTFIGTFKAFDKHMNLILGDCEEF KI+SKNSK +
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 456
REEKR LGFVLLRGENIVSLT+
Sbjct: 61 REEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPINLSA 120
Query: 457 XXXXXXXXXRGVGGPSQQHMAPGNRG 534
RGVGGP+QQHMAP RG
Sbjct: 121 VPAGLQGPVRGVGGPAQQHMAPMGRG 146
>BT023632-1|AAY85032.1| 95|Drosophila melanogaster IP05684p
protein.
Length = 95
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
++ +IN+ V +I D R FIGT K FD+ +N+I+ +C E + T E+ LG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE------RVFSTTSGIEQIVLG 57
Query: 307 FVLLRGENI 333
++RG+NI
Sbjct: 58 LHIIRGDNI 66
>AE014296-355|AAF47567.1| 95|Drosophila melanogaster CG2021-PA
protein.
Length = 95
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
++ +IN+ V +I D R FIGT K FD+ +N+I+ +C E + T E+ LG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE------RVFSTTSGIEQIVLG 57
Query: 307 FVLLRGENI 333
++RG+NI
Sbjct: 58 LHIIRGDNI 66
>BT022486-1|AAY54902.1| 121|Drosophila melanogaster IP06106p
protein.
Length = 121
Score = 45.2 bits (102), Expect = 8e-05
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTAD 282
+T G+ K+Q+ + +R+++ D R +G F D+ N++L C E+ +
Sbjct: 38 LTPGRR-KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY---------LVE 87
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
+E R LG V++ G++IVSL+I
Sbjct: 88 GQEPRLLGNVMVPGQHIVSLSI 109
>AE014134-505|AAN10396.1| 121|Drosophila melanogaster CG31950-PA
protein.
Length = 121
Score = 45.2 bits (102), Expect = 8e-05
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTAD 282
+T G+ K+Q+ + +R+++ D R +G F D+ N++L C E+ +
Sbjct: 38 LTPGRR-KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY---------LVE 87
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
+E R LG V++ G++IVSL+I
Sbjct: 88 GQEPRLLGNVMVPGQHIVSLSI 109
>BT001552-1|AAN71307.1| 103|Drosophila melanogaster RE11655p
protein.
Length = 103
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FXKIKSKNSKTADREEKRTLGF 309
++ +V V +++ R G AFD+H+N++LGD EE +I + + + KRT+
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPM 85
Query: 310 VLLRGENIV 336
+ +RG+ ++
Sbjct: 86 LFVRGDGVI 94
>AE014297-3433|AAN13967.1| 103|Drosophila melanogaster CG31184-PA
protein.
Length = 103
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FXKIKSKNSKTADREEKRTLGF 309
++ +V V +++ R G AFD+H+N++LGD EE +I + + + KRT+
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPM 85
Query: 310 VLLRGENIV 336
+ +RG+ ++
Sbjct: 86 LFVRGDGVI 94
>BT025925-1|ABG02169.1| 287|Drosophila melanogaster IP12320p
protein.
Length = 287
Score = 37.1 bits (82), Expect = 0.021
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
+ +++ ++RV R G K +D +NL+L + E+ + + K + E+ R+LG
Sbjct: 201 LSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTE-EQTRSLG 259
Query: 307 FVLLRGENIV 336
V+ RG +V
Sbjct: 260 LVVCRGTALV 269
>AY113637-1|AAM29642.1| 110|Drosophila melanogaster RH73529p
protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.021
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
+ +++ ++RV R G K +D +NL+L + E+ + + K + E+ R+LG
Sbjct: 24 LSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTE-EQTRSLG 82
Query: 307 FVLLRGENIV 336
V+ RG +V
Sbjct: 83 LVVCRGTALV 92
>AY113521-1|AAM29526.1| 91|Drosophila melanogaster RE60135p
protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.021
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +1
Query: 82 LPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKS 261
+P S+ T+ + + I R+ +I+++ + +GT FD +N++L D E+
Sbjct: 4 VPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEY----- 58
Query: 262 KNSKTADREEKRTLGFVLLRGENIVSL 342
T D L +LL G NI L
Sbjct: 59 --ENTPDGRRITKLDQILLNGNNITML 83
>AE014296-1060|AAF50703.1| 91|Drosophila melanogaster CG6610-PA
protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.021
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +1
Query: 82 LPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKS 261
+P S+ T+ + + I R+ +I+++ + +GT FD +N++L D E+
Sbjct: 4 VPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEY----- 58
Query: 262 KNSKTADREEKRTLGFVLLRGENIVSL 342
T D L +LL G NI L
Sbjct: 59 --ENTPDGRRITKLDQILLNGNNITML 83
>AE014134-2763|AAF53562.1| 110|Drosophila melanogaster CG13277-PA
protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.021
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
+ +++ ++RV R G K +D +NL+L + E+ + + K + E+ R+LG
Sbjct: 24 LSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTE-EQTRSLG 82
Query: 307 FVLLRGENIV 336
V+ RG +V
Sbjct: 83 LVVCRGTALV 92
>AY070698-1|AAL48169.1| 76|Drosophila melanogaster RH35475p
protein.
Length = 76
Score = 34.3 bits (75), Expect = 0.15
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTL 303
+++++++ R+ + L R G + FD MN++L D E K +KN+ +
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNN----------I 57
Query: 304 GFVLLRGENIV 336
G V++RG +IV
Sbjct: 58 GMVVIRGNSIV 68
>AE014298-2437|AAF48634.1| 76|Drosophila melanogaster CG9742-PA
protein.
Length = 76
Score = 34.3 bits (75), Expect = 0.15
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTL 303
+++++++ R+ + L R G + FD MN++L D E K +KN+ +
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNN----------I 57
Query: 304 GFVLLRGENIV 336
G V++RG +IV
Sbjct: 58 GMVVIRGNSIV 68
>BT003597-1|AAO39600.1| 94|Drosophila melanogaster GM19936p
protein.
Length = 94
Score = 33.5 bits (73), Expect = 0.26
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 148 RVRVILQD--SRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLGFVLLR 321
RV+V L + S G FD++MNL+L D EE +K++ ++R LG ++L+
Sbjct: 29 RVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY-VKTR--------QRRNLGRIMLK 79
Query: 322 GENI 333
G+NI
Sbjct: 80 GDNI 83
>AE014134-1360|AAF52576.1| 94|Drosophila melanogaster CG18591-PA
protein.
Length = 94
Score = 33.5 bits (73), Expect = 0.26
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 148 RVRVILQD--SRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLGFVLLR 321
RV+V L + S G FD++MNL+L D EE +K++ ++R LG ++L+
Sbjct: 29 RVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY-VKTR--------QRRNLGRIMLK 79
Query: 322 GENI 333
G+NI
Sbjct: 80 GDNI 83
>AY069315-1|AAL39460.1| 119|Drosophila melanogaster LD03002p
protein.
Length = 119
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 142 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADR----EEKRTLGF 309
N +V + ++++ +G KAFD+H N++L + +E + K + + R +
Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISK 97
Query: 310 VLLRGENIV 336
+ LRG++++
Sbjct: 98 MFLRGDSVI 106
>AE014297-442|AAF54135.1| 119|Drosophila melanogaster CG1249-PA
protein.
Length = 119
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 142 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADR----EEKRTLGF 309
N +V + ++++ +G KAFD+H N++L + +E + K + + R +
Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISK 97
Query: 310 VLLRGENIV 336
+ LRG++++
Sbjct: 98 MFLRGDSVI 106
>AE013599-3518|AAN16119.1| 281|Drosophila melanogaster CG32834-PA
protein.
Length = 281
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 567 PHDG-WPSSXNDGSSSWHGSWWAR 635
P DG W + GS+SW GSWW R
Sbjct: 138 PDDGSWCTVSGWGSTSWWGSWWDR 161
>AY119189-1|AAM51049.1| 256|Drosophila melanogaster SD11312p
protein.
Length = 256
Score = 25.0 bits (52), Expect(2) = 2.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 262 KNSKTADREEKRTLGFVLLRGENIVSLTI 348
KN + E +R L +L+RGEN+V +++
Sbjct: 224 KNLNRKNVEIRRELPQILIRGENVVLVSL 252
Score = 23.8 bits (49), Expect(2) = 2.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 148 RVRVILQDSRTFIGTFK----AFDKHMNLILGDCEEFXKIKSKN 267
RVRV+++ + G+ + AFDK NL+L + E K + N
Sbjct: 151 RVRVVIRKHGSVGGSVEGELLAFDKQWNLLLRNVTETWKRRKYN 194
>AE013599-936|AAF58894.1| 256|Drosophila melanogaster CG12924-PA
protein.
Length = 256
Score = 25.0 bits (52), Expect(2) = 2.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 262 KNSKTADREEKRTLGFVLLRGENIVSLTI 348
KN + E +R L +L+RGEN+V +++
Sbjct: 224 KNLNRKNVEIRRELPQILIRGENVVLVSL 252
Score = 23.8 bits (49), Expect(2) = 2.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 148 RVRVILQDSRTFIGTFK----AFDKHMNLILGDCEEFXKIKSKN 267
RVRV+++ + G+ + AFDK NL+L + E K + N
Sbjct: 151 RVRVVIRKHGSVGGSVEGELLAFDKQWNLLLRNVTETWKRRKYN 194
>BT023954-1|ABB36458.1| 891|Drosophila melanogaster AT29009p
protein.
Length = 891
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -1
Query: 637 VLAHHDPCQEELPSXLEEGHPSWGLLAFEEEQKVDHDFLVPCV 509
V A DP +LP E + + +E ++ + +VPC+
Sbjct: 521 VTAETDPASYKLPERRERDRDRFKTIKISKEMRLQPEIIVPCI 563
>AE014298-1586|ABI30977.1| 466|Drosophila melanogaster CG34143-PB,
isoform B protein.
Length = 466
Score = 28.3 bits (60), Expect = 9.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -2
Query: 147 IINMLLHLIVFADRHFIGVIRKILLDIWKASICFSDIHLTVAF 19
+IN+ L ++ ++H +G I++D W + + HL ++
Sbjct: 329 VINLKLRIVSLGNQHIVGQALGIMVDTWVVWVRLNLSHLPASY 371
>AE014298-1585|AAF48021.2| 553|Drosophila melanogaster CG34143-PA,
isoform A protein.
Length = 553
Score = 28.3 bits (60), Expect = 9.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -2
Query: 147 IINMLLHLIVFADRHFIGVIRKILLDIWKASICFSDIHLTVAF 19
+IN+ L ++ ++H +G I++D W + + HL ++
Sbjct: 329 VINLKLRIVSLGNQHIVGQALGIMVDTWVVWVRLNLSHLPASY 371
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,206,009
Number of Sequences: 53049
Number of extensions: 347369
Number of successful extensions: 980
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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