Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O01
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.7  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 474 ILXHQINHLKQIQRQGSASS 415
           IL   + HL+ +QRQ +A S
Sbjct: 80  ILEMTVKHLQNLQRQQAAMS 99


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 81  GIQFKYIXNIHSILFTFW 134
           G+ F+Y  N+H+    FW
Sbjct: 160 GMTFRYHFNVHNSGTHFW 177


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +3

Query: 363 LDKMXREWQMHQAFQTIMMMLSPDVVFVLGDLFDEXEWTNNKXFQXYVE 509
           + K+    Q+     T    L+P++ ++L  L+    WT+   F  + E
Sbjct: 96  MSKLLGNHQLVYNCHTFGRFLAPNLTYLLVALYSGYVWTDILGFGYFRE 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,207
Number of Sequences: 336
Number of extensions: 2790
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)