Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O01
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    44   2e-05
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    27   3.0  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   9.2  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   9.2  

>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
 Frame = +3

Query: 222 YCEYIIYFIXIAQCNWPVTNDTHKSIQSLKALMISDTHLLG------PXXGHWLDKMXRE 383
           Y E II+     +C+W        +   ++  +++D  L+       P     + K   +
Sbjct: 18  YLEKIIHTRPHKKCDWRSWEQWESTGNPVRIALVADPQLVDDLTYDYPRPLIGIVKWISD 77

Query: 384 WQMHQAFQTIMMMLSPDVVFVLGDLFDEXEWTNNKXFQXYVERFYXLFMVPPHVKMYVVA 563
             + + ++ +   L PD+ F++GDL D       + F+    R   +       K+ +  
Sbjct: 78  QFLRRHWRYLHKSLKPDITFIMGDLMDTGREFATEEFKKDYFRMMNVLDPKFTNKLEIYP 137

Query: 564 XNHDIGFHNYIRKGAIQRFYKL 629
            NHDIGF N+     IQRF  L
Sbjct: 138 GNHDIGFGNHAIVKDIQRFESL 159


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 6/26 (23%), Positives = 18/26 (69%)
 Frame = +3

Query: 453 DLFDEXEWTNNKXFQXYVERFYXLFM 530
           D+ D+ +WT+N  +   +++F+ +++
Sbjct: 45  DIVDQLQWTSNAFYMKTIDQFHEMYI 70


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 588 NYIRKGAIQRFYKLLN 635
           NY++K  +Q+F KLLN
Sbjct: 25  NYLKKNDLQKFRKLLN 40


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 109  FTRYSSHFGNKTTMSKSSCDESQKM 183
            FT+Y +HFGN  T  ++   ++  +
Sbjct: 1016 FTKYRNHFGNLMTSEETKAPDNNDL 1040


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,828
Number of Sequences: 5004
Number of extensions: 41381
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)