Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O01
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851...    53   2e-07
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635...    36   0.027
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    28   7.2  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           27   9.5  

>03_03_0254 +
           15884149-15884295,15884765-15884803,15884958-15885136,
           15887175-15887310,15887769-15887865,15888448-15888534,
           15888621-15888721,15888905-15888939,15889520-15889577,
           15889650-15889724,15890048-15890135,15890155-15890308,
           15890395-15890638
          Length = 479

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
 Frame = +3

Query: 162 MRRVTKNVXXXXXXXXXXXXYCEYIIYFIXIAQCNWPVTNDTHKSIQS----LKALMISD 329
           M+ VT+              Y E   Y+     C+WP ++ +  S  S    +K  +++D
Sbjct: 1   MQSVTRLTLLLCAAWAAALLYGEMGAYWAARLSCSWPSSSSSPPSSLSPNNHVKIAVVAD 60

Query: 330 THLLG------PXXGHWLD--KMXREWQMHQAFQTIMMMLSPDVVFVLGDLFDEXEWTNN 485
             L+       P     L   +   +  M ++FQ++++   PD++  LGD FD   + +N
Sbjct: 61  PQLMDSTSLGLPPSSIALQAAEFYTDLNMRRSFQSVVLPFKPDMLLFLGDHFDGGPYMSN 120

Query: 486 KXFQXYVERFYXLF-----MVPPHVKMYVVAXNHDIGFHNY--IRKGAIQRFYK 626
           + +   + RF  +F     +  P++ +Y ++ NHDIG+  +  I    I R+ K
Sbjct: 121 EEWHESLSRFKHIFSMNEHITNPNIPIYYLSGNHDIGYSAFHKIHPEVISRYEK 174


>06_01_0837 -
           6355315-6355342,6356185-6356361,6356579-6356662,
           6356989-6357542,6358086-6358322
          Length = 359

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 21/92 (22%), Positives = 42/92 (45%)
 Frame = +3

Query: 306 LKALMISDTHLLGPXXGHWLDKMXREWQMHQAFQTIMMMLSPDVVFVLGDLFDEXEWTNN 485
           L+ +M+SD  LLG     + D+  R   M + F   +  L PD++ VLGD+         
Sbjct: 47  LRVMMVSDLMLLGSD-ATYADRFFRNHVMSKLFAKSIETLRPDMIVVLGDISAMGFQLKE 105

Query: 486 KXFQXYVERFYXLFMVPPHVKMYVVAXNHDIG 581
             +   +++F  +      + +++   + D+G
Sbjct: 106 SKWIDVIDQFKGILGQYSDLPLHIALGDKDVG 137


>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 113 LDTLHILVIKQLCLSHHATSHKKC 184
           +DTLH+ V +Q+ +  H   HK C
Sbjct: 207 VDTLHVTVEEQIAMFMHIVGHKWC 230


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 387 QMHQAFQTIMMMLSPDVVFVLGDLFDEXEWTNNKXFQXYVER 512
           +MH + Q + + +S  V  +LGD+ D  + T    F+   ER
Sbjct: 584 RMHTSLQDLQLFMSRAVEVLLGDIHDRSDPTLLSHFEPVQER 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,291
Number of Sequences: 37544
Number of extensions: 225863
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)