Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O01
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   7.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 486 YYLSILXHQINHLKQIQRQ 430
           YY  I+ H +NH K ++ Q
Sbjct: 230 YYSQIVSHVVNHEKALREQ 248


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 185 YIFCDSSHDDLDIVVLLPKCEEY 117
           +I CDSS  + D++  LP   EY
Sbjct: 64  HINCDSSKFEEDLMNKLPTTPEY 86


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 422 HHHYSLKCLMHLPLAXHFIQP 360
           HHH+  + L HL    H+ QP
Sbjct: 353 HHHHQTQSLQHL----HYRQP 369


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 71  SNYKHNPHNKY 39
           +NYK+N +NKY
Sbjct: 94  NNYKYNYNNKY 104


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 267 WPVTNDTHKS 296
           WPV NDT KS
Sbjct: 74  WPVGNDTLKS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,072
Number of Sequences: 438
Number of extensions: 2984
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)