Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N19
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 87 3e-18
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 3.0
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.3
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.3
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 7.0
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 25 7.0
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 7.0
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 25 9.3
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 86.6 bits (205), Expect = 3e-18
Identities = 36/105 (34%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Frame = +2
Query: 317 DQSSQLLSRPRLQELXREVDPTVQLDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNV 496
D ++LLS+ +L +L +++D +++ +VEE+LL++A +F+++ N AC LAKHR + +
Sbjct: 337 DNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTL 396
Query: 497 XLXDVXLHLXRQWNMWIPXFGNDEL-RPYKRAAVTEAHRQRMALI 628
+ DV LHL R WN+ +P F +D++ + ++ T +++Q+ I
Sbjct: 397 DVRDVQLHLERNWNIRLPGFASDDIVKSARKTGPTPSYQQKQNAI 441
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +2
Query: 128 NNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQ 304
+N Q + + +GQ +Q M++ Q S +P+Q S G+ V G+
Sbjct: 533 SNGSFQGPGITHLSEMGQRILQRFQEEMENRMNQTRSESSTPAQQSAAGSSINVDTAGR 591
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 188 IQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQSSQLLSRPRLQ 355
+Q V++ ++S + + + H P+G SQV K +G + D+SS + R Q
Sbjct: 715 LQAVSDSIESAKANRKPL--ALQSHRPLGITSQVPKFEEGYSLDKSSHDIDPERAQ 768
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 200 NNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGA 313
N P +SP L+ ++GS S HS S + G G A
Sbjct: 1786 NEPRRSPSLKEVLLRGSHSLHSNNDRTSFDIEAGFGTA 1823
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 AIQYVNNPMQSPQLQNTSIQGSPSQHS-PMGTQSQ 286
+++ N + P LQN SI SPS+ GTQ +
Sbjct: 22 SVELENVEYEGPSLQNVSICASPSEKKRKWGTQDE 56
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1
Query: 253 FSTQPYGDPVTSXKSWPRRSW 315
F+ YGD S W RR W
Sbjct: 746 FAPMTYGDKSLSVDEWTRRKW 766
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 530 QWNMWIPXFGNDELRPYK 583
+WN WIP D+L P K
Sbjct: 457 KWNEWIPDVELDDLHPKK 474
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 137 LAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQ 286
+++ A P T G I Y NP +P N + PS +PMGT S+
Sbjct: 203 ISEPAKCPYCMTERFGVI-YKPNPKLTPFSFNNNPDTLPSNIAPMGTLSK 251
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 185 AIQYVNNPMQSPQLQNTSIQGSPSQH--SPMG 274
++++ N+ +Q +L I SPS H SPMG
Sbjct: 172 SLKHTNDSLQKKELSPHEIAESPSSHSTSPMG 203
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 218 PQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQS 325
P T+ +PS+H+ +G+Q+Q Q +G ++
Sbjct: 83 PLKTTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRT 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,783
Number of Sequences: 5004
Number of extensions: 38057
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -