Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N19
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 107 1e-23
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 86 3e-17
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936... 31 0.59
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 31 1.0
12_01_0473 + 3708770-3710026 29 3.1
04_01_0071 - 713544-713975 29 4.1
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 28 7.2
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676 28 7.2
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 27 9.6
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 107 bits (256), Expect = 1e-23
Identities = 45/110 (40%), Positives = 74/110 (67%)
Frame = +2
Query: 311 AGDQSSQLLSRPRLQELXREVDPTVQLDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAP 490
AG ++LLS+ + EL ++DP+ +LD +VE++L+ +A DF+++ AC+LAKHR +
Sbjct: 156 AGGSGNRLLSKRSIHELVAQIDPSEKLDPEVEDVLIDIAEDFVESVATFACSLAKHRKSS 215
Query: 491 NVXLXDVXLHLXRQWNMWIPXFGNDELRPYKRAAVTEAHRQRMALIRKSI 640
+ DV LH R WN+ +P F DE++ YK+ V + HR+R+ LI+KS+
Sbjct: 216 ILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSM 265
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 85.8 bits (203), Expect = 3e-17
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Frame = +2
Query: 179 QGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVG---QGGAGDQ----SSQLL 337
Q +Q + QSP++ S GS + G+Q G GG+ Q ++QLL
Sbjct: 346 QHILQQLQQQQQSPRI---SASGSQKSMNLTGSQPGTPLSGGTMTGGSASQGAEVTNQLL 402
Query: 338 SRPRLQELXREVDPTVQLDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXL 517
+ ++Q+L +VDP ++D +VE++LL++A DFID+ AC LAKHR + + DV L
Sbjct: 403 GKRKIQDLVSQVDPLGKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAKDVLL 462
Query: 518 HLXRQWNMWIPXFGNDELRPYK 583
HL + W++ +P F ++ P +
Sbjct: 463 HLEKNWHLSVPGFLREDKNPQR 484
>01_05_0532 -
22992520-22992879,22993323-22993403,22993565-22993639,
22994140-22994301
Length = 225
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 125 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQ 304
S N A ++ P+ G+ GQ + + P S Q +NT + S QS G
Sbjct: 126 SANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGS 185
Query: 305 GGAG 316
G G
Sbjct: 186 GNGG 189
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Frame = +2
Query: 176 GQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSP---MGTQSQVXKVGQGGAGDQSSQLLSR 343
G G + +P SP Q S + G P+ P GG GD+S + R
Sbjct: 445 GTGTSKETRSPALSPPPQAASFKSGLPTDAFPGRLADNADHAAAAAAGGGGDKSEETTPR 504
Query: 344 PRLQEL----XREVDPTVQLDEQVEEMLLQLAXDFIDT 445
P+L+ L R V + +Q++ Q+ + I+T
Sbjct: 505 PKLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIET 542
>12_01_0473 + 3708770-3710026
Length = 418
Score = 29.1 bits (62), Expect = 3.1
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 98 SFVVLKV*MSNNSLAQAANMPTIGTVGQGA-IQYVNNPMQ--SPQLQNTSIQGSPSQHSP 268
+F +L V S+ + A+ P G G V P+Q S ++ G+ +
Sbjct: 300 AFWMLPVSASSAAAARPTEQPMWSFAGGGGGAATVQAPLQFMSTRVNYPGSAGAGMSDTN 359
Query: 269 MGTQSQVXKVGQGGAGDQSSQLLSRPRLQELXREVDPTVQLDEQVEE 409
+G + + +GGAGDQ Q +P + + R D D+ +E
Sbjct: 360 LGMLAALNAYNRGGAGDQQPQ--QQPEMDQQGRNDDDDDDGDDSGDE 404
>04_01_0071 - 713544-713975
Length = 143
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 215 SPQLQNTSIQGSPSQHSPMGTQSQVXKV-GQGGAGDQSSQLLSRPRLQELXREVDPTVQL 391
S LQ+ S Q SP QSQ + D S+ R ++L R D +Q+
Sbjct: 73 SSMLQSQSQQQQQQSQSPQSQQSQSQSPQSMLMSSDMSAMGGGGRRREQLDRSSDGWMQI 132
Query: 392 DEQVEEMLLQL 424
DEQV+ + +
Sbjct: 133 DEQVKSKSIDI 143
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = +2
Query: 221 QLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQSSQLLSRP--RLQELXR-EVDPTVQL 391
+L G P H P + GG GD Q P +L R DP +
Sbjct: 46 ELSEGEKDGKPDTHPPPAAAAAEAAADDGGGGDHQQQQQQPPPHQLSRFARINSDPRIVS 105
Query: 392 DEQVE 406
DE+ E
Sbjct: 106 DEEEE 110
>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
Length = 365
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 122 MSNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHS 265
+ + A A I TVG G+ Y+NN P NT Q +P Q++
Sbjct: 149 LGDEDTAAAHLSQCIFTVGMGSNDYLNNYFM-PAFYNTGSQYTPEQYA 195
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 152 NMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQSSQ 331
N P+ VG IQY ++ Q P + G P S M + + G G QSS+
Sbjct: 155 NYPSTPGVGNAMIQYPSSQTQLPPTASAMRDGFPQAPSSMHIAPSLEQPHFGHDG-QSSK 213
Query: 332 LLSRPRLQEL 361
+ P Q L
Sbjct: 214 IAVDPSDQPL 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,207
Number of Sequences: 37544
Number of extensions: 241399
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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