Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N19
(643 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription facto... 156 7e-38
U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein. 156 7e-38
D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein. 156 7e-38
BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II... 156 7e-38
BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein. 156 7e-38
AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II... 156 7e-38
AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II... 156 7e-38
U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein. 153 7e-37
AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform... 32 2.0
AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein... 32 2.0
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 30 6.1
>X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription factor
TFTIID protein.
Length = 161
Score = 156 bits (378), Expect = 7e-38
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 8/145 (5%)
Frame = +2
Query: 233 TSIQGSPSQHSPMGTQSQ---VXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQ 388
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L REVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 389 LDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDE 568
LDE VEEMLLQ+A DFI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 569 LRPYKRAAVTEAHRQRMALIRKSIK 643
+RPYK+A TEAH+QRMALIRK+ K
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTK 160
>U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein.
Length = 161
Score = 156 bits (378), Expect = 7e-38
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 8/145 (5%)
Frame = +2
Query: 233 TSIQGSPSQHSPMGTQSQ---VXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQ 388
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L REVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 389 LDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDE 568
LDE VEEMLLQ+A DFI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 569 LRPYKRAAVTEAHRQRMALIRKSIK 643
+RPYK+A TEAH+QRMALIRK+ K
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTK 160
>D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein.
Length = 161
Score = 156 bits (378), Expect = 7e-38
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 8/145 (5%)
Frame = +2
Query: 233 TSIQGSPSQHSPMGTQSQ---VXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQ 388
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L REVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 389 LDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDE 568
LDE VEEMLLQ+A DFI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 569 LRPYKRAAVTEAHRQRMALIRKSIK 643
+RPYK+A TEAH+QRMALIRK+ K
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTK 160
>BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 156 bits (378), Expect = 7e-38
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 8/145 (5%)
Frame = +2
Query: 233 TSIQGSPSQHSPMGTQSQ---VXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQ 388
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L REVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 389 LDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDE 568
LDE VEEMLLQ+A DFI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 569 LRPYKRAAVTEAHRQRMALIRKSIK 643
+RPYK+A TEAH+QRMALIRK+ K
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTK 160
>BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein.
Length = 161
Score = 156 bits (378), Expect = 7e-38
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 8/145 (5%)
Frame = +2
Query: 233 TSIQGSPSQHSPMGTQSQ---VXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQ 388
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L REVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 389 LDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDE 568
LDE VEEMLLQ+A DFI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 569 LRPYKRAAVTEAHRQRMALIRKSIK 643
+RPYK+A TEAH+QRMALIRK+ K
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTK 160
>AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 156 bits (378), Expect = 7e-38
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 8/145 (5%)
Frame = +2
Query: 233 TSIQGSPSQHSPMGTQSQ---VXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQ 388
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L REVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 389 LDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDE 568
LDE VEEMLLQ+A DFI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 569 LRPYKRAAVTEAHRQRMALIRKSIK 643
+RPYK+A TEAH+QRMALIRK+ K
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTK 160
>AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding proteineudogene protein.
Length = 161
Score = 156 bits (378), Expect = 7e-38
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 8/145 (5%)
Frame = +2
Query: 233 TSIQGSPSQHSPMGTQSQ---VXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQ 388
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L REVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 389 LDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDE 568
LDE VEEMLLQ+A DFI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 569 LRPYKRAAVTEAHRQRMALIRKSIK 643
+RPYK+A TEAH+QRMALIRK+ K
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTK 160
>U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein.
Length = 131
Score = 153 bits (370), Expect = 7e-37
Identities = 72/130 (55%), Positives = 97/130 (74%), Gaps = 5/130 (3%)
Frame = +2
Query: 269 MGTQSQVXKV-GQGGAGD----QSSQLLSRPRLQELXREVDPTVQLDEQVEEMLLQLAXD 433
M + V K+ G GAG +++Q+L++ +LQ+L REVDP QLDE VEEMLLQ+A D
Sbjct: 1 MANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD 60
Query: 434 FIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNMWIPXFGNDELRPYKRAAVTEAHRQ 613
FI++ + +AC LA+HR + + + DV LHL RQWNMWIP FG++E+RPYK+A TEAH+Q
Sbjct: 61 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQ 120
Query: 614 RMALIRKSIK 643
RMALIRK+ K
Sbjct: 121 RMALIRKTTK 130
>AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform
precursor protein.
Length = 1446
Score = 31.9 bits (69), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 158 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQS 325
P+ G+ QG+++ + SP ++TS QGSPSQ +P + QG S
Sbjct: 653 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 707
>AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein
protein.
Length = 1374
Score = 31.9 bits (69), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 158 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQS 325
P+ G+ QG+++ + SP ++TS QGSPSQ +P + QG S
Sbjct: 581 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 635
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 30.3 bits (65), Expect = 6.1
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +2
Query: 128 NNSLAQAANMPTI---GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKV 298
NN+ A A +PT+ T G+ QY N P+Q ++ QG+ Q P+ Q + +
Sbjct: 180 NNAAAYAGEVPTLLHAETYGRRP-QYSNPPVQGEVMEGADNQGAGEQGRPV-RQICIGDI 237
Query: 299 GQGGAGDQSSQLLSRPRLQELXREVDPTVQLDE 397
AG LL++ + +E E D Q DE
Sbjct: 238 DHDSAG----ALLAKRQPREDGNEEDKENQGDE 266
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,930,905
Number of Sequences: 237096
Number of extensions: 1296784
Number of successful extensions: 3765
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3765
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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