Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N19
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    60   1e-09
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
 Frame = +2

Query: 188 IQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQSSQLLSRPRLQELXR 367
           +Q+     Q P  Q   IQ  P    P   Q Q        A      ++ + +L +L +
Sbjct: 185 VQHQQQHQQPPPSQQ--IQQPPI---PQPQQQQAPPPQMIPAAVPYGSIMEKSKLDDLMQ 239

Query: 368 EVDPTVQLDEQVEEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVXLHLXRQWNM-W 544
           ++  T  L+E V+++L++ A DF+ + ++ AC + K+R    +   D+   L   +NM  
Sbjct: 240 QISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNREVKKIESRDIEFILKNVYNMPV 299

Query: 545 IP-----XFGN--DELRPYKRAAV-TEAHRQRMALIRKSIK 643
           +P      FG+  + +   K   V TEAH+QR+AL++K IK
Sbjct: 300 VPRAASHNFGSQTEVIDLSKEKFVPTEAHKQRVALLKKQIK 340


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 125 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 283
           S N     A  P+ G VG     + + P   P L    + GSP +  P+GT S
Sbjct: 366 SVNPAPAPAPTPSAGLVGSRKELFSSKP-SGPVLPKPQVNGSPKKWPPVGTTS 417


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +2

Query: 140 AQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSPMGTQSQVXKVGQGGAG 316
           AQ+ ++P  G  GQ   Q    P  SP       Q G+P Q  P G   Q    G  GA 
Sbjct: 213 AQSESIP--GAPGQAGPQGPPGPAGSPGAPGGPGQPGAPGQKGPSGAPGQPGADGNPGAP 270

Query: 317 DQSSQ 331
            Q  Q
Sbjct: 271 GQPGQ 275


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 374 DPTVQLDEQVEEMLLQLAXDFIDTTLNSACAL 469
           D  V + E +E+  + +A   I TTLNS C++
Sbjct: 452 DDRVAIHEAMEQQTISIAKAGITTTLNSRCSV 483


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +2

Query: 197 VNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQSSQLLSRPRLQELXREVD 376
           +N P  S  + +TSIQ + S+ +P  + S+          D SS     P   E  ++  
Sbjct: 172 MNTPPASLAVVDTSIQSTTSETTPGHSSSRKPSKEDSSPFDASS-ATPAPSQLETPQQQK 230

Query: 377 PTVQLDEQVEEMLL 418
           PT     QVE ++L
Sbjct: 231 PTTTRHFQVEPVVL 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,560,630
Number of Sequences: 27780
Number of extensions: 216132
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)