Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N19
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   7.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 299  GQGGAGDQSSQLLSRPRLQELXREVDPTVQLDEQVEEM 412
            G+G   D + +L   PRL+EL   V  T  + + VE+M
Sbjct: 1280 GKGERIDMNGKLRQSPRLKEL---VGATSIIKDCVEDM 1314


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 203 NPMQSPQLQNTSIQGSPSQHSPMG 274
           +P QSPQ        +PSQ  P G
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPG 49


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 26  TRIDTLISEISKCLKIIVFIRDVFSFVVLKV*MSNNSLAQAANMP 160
           TR + +  E+S  +K I +     +FV +     +N L  ++ MP
Sbjct: 92  TRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 136


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 180 KALYNT--LIIPCKVLNFKTLL 239
           K L+ T  LIIPC  ++F T+L
Sbjct: 239 KTLFYTVNLIIPCMGISFLTVL 260


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 26  TRIDTLISEISKCLKIIVFIRDVFSFVVLKV*MSNNSLAQAANMP 160
           TR + +  E+S  +K I +     +FV +     +N L  ++ MP
Sbjct: 108 TRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 152


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 26  TRIDTLISEISKCLKIIVFIRDVFSFVVLKV*MSNNSLAQAANMP 160
           TR + +  E+S  +K I +     +FV +     +N L  ++ MP
Sbjct: 165 TRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,368
Number of Sequences: 438
Number of extensions: 2635
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)