Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N17
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0583 - 4321169-4321279,4321328-4321384,4321532-4321702,432...   107   8e-24
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    28   5.6  

>03_01_0583 -
           4321169-4321279,4321328-4321384,4321532-4321702,
           4321960-4322042,4322581-4322647,4322730-4322780,
           4323203-4323265,4323363-4323413,4323500-4323556,
           4324261-4324368
          Length = 272

 Score =  107 bits (257), Expect = 8e-24
 Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 3/168 (1%)
 Frame = +1

Query: 151 LKSIERYNPANLEILXRYVEMQSRXNTYDLGANLAVLKLYQFNPEKFNAXITCQILLKAL 330
           L ++  YNP  L  L  +V  Q    TY+L ANL++L+LYQF PE+ +  I  +IL+KAL
Sbjct: 15  LVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILIKAL 74

Query: 331 TNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVHQMPELCSRISGF 510
              P  DF+LC  L+ E V   E    +  L+  LE   F QFW+   +   +   + GF
Sbjct: 75  MAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGF 134

Query: 511 HDSIRKFVCHVVGITFQTIDKNNL---XNLLGGIDDVTLKHWVXKYGW 645
             +I+ +  HV+ +T+Q + +  L    N+ G   D  L+H +   GW
Sbjct: 135 EQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGW 182


>05_02_0030 +
           5826065-5826092,5826307-5828309,5828412-5828732,
           5828821-5828907,5828981-5829583,5829680-5829844,
           5829941-5830235,5830320-5830534,5830621-5830926,
           5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 277 NPEKFNAXITCQILLKALTNFPHTDFT 357
           N E+++  I C  L K + NFPH D T
Sbjct: 709 NNEEYDRAIRCCALDKDMENFPHGDLT 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,623,556
Number of Sequences: 37544
Number of extensions: 287191
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)