Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N13
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.1  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   2.1  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    26   2.7  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   3.6  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   4.8  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   4.8  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   6.3  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   8.4  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 377 LGRALDVLPRLFQSLLGLAVRVSERCPGDSW 285
           +G  +  L RLF SL GL    ++  PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 294 SRAALGDANGKAKEALEQSRQNIERTAEE 380
           S A  G  NG+AKE  E+ R   ++T E+
Sbjct: 468 SSAKQGKGNGRAKETPEEKRARKKKTKED 496


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 339 LEQSRQNIERTAEELRKAHPDVEK 410
           +EQ+R   E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 354 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 232
           AST+ K PWP  + L  +P     + +  CS+ +E  ++ +
Sbjct: 38  ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 318 NGKAKEALEQSRQNIERTAEELRKAHPDVEKN 413
           N K KE  E++     +  EELR+A PD E++
Sbjct: 22  NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 360 CSASTVPKPPWPCRSRLRALPWRLLAK 280
           C  +T+PKPP+   + L  LP +  A+
Sbjct: 290 CPHTTIPKPPYQSDTDLTELPTKSTAQ 316


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 312 DANGKAKEALEQSRQNIERTAEE 380
           D+  KAK  LEQ+R  +ERT  E
Sbjct: 403 DSIKKAKTELEQARIELERTQRE 425


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 18  ASPPHSVSRQHIMAAKF---VVLFACIALAQGSDGATRRS-RLLQGHRTPHQGSS 170
           A P   +++ +I+   F   V +   IALA GSD  TR S   + G  T + G S
Sbjct: 190 AIPSRVIAKVNIINITFQFLVSIILIIALAAGSDSTTRNSGSFIFGDFTNYSGWS 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,656
Number of Sequences: 5004
Number of extensions: 23935
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)