Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N13
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 32 0.29
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 29 2.7
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 29 2.7
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 3.6
07_03_0441 + 18256103-18258076 28 4.8
04_01_0180 + 2034021-2034023,2034741-2035088 28 4.8
03_05_0373 + 23581812-23583293 28 4.8
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 28 4.8
01_01_0401 + 3043634-3043894,3045610-3045849 28 4.8
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 27 6.3
06_01_0008 + 141405-142421 27 6.3
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036... 27 6.3
01_01_0178 + 1514878-1515417 27 8.4
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.9 bits (69), Expect = 0.29
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3
Query: 372 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 214
P R SA T+ WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 99 PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 300 AALGDANGKAKEALEQSRQNIERTAEELRKAHPDVE 407
AA+ DA G+ ++A+E ++ E+L A+PDVE
Sbjct: 514 AAIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVE 549
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 229 QQGLEGRLRVRAATAQRLRQESPGQRSETRTARPRRLWN 345
+Q G+ TA+ RQ S GQ+S + A P R W+
Sbjct: 1132 RQWSSGQQSYNTVTAEPSRQWSSGQQSYSNPAEPSRQWS 1170
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 390 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 268
PC P P R ++T + PW R R + W L C
Sbjct: 26 PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66
>07_03_0441 + 18256103-18258076
Length = 657
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 378 PRPCARCSASTVPKP-PWPCR---SRLRALPWRLLAKALSCCST 259
PRP A SAS+ P P PW R LR+ P L A + C+T
Sbjct: 42 PRPYAASSASSSPTPSPWLARVVSLILRSPPATLAADLRAFCAT 85
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 333 EALEQSRQNIERTAEELRKAHPDVEK 410
EALE+ QN+ R EE +K H +++K
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQK 77
>03_05_0373 + 23581812-23583293
Length = 493
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 366 ARCSASTVPKPPW 328
+RCSAST PK PW
Sbjct: 66 SRCSASTPPKSPW 78
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 342 PKPPWPCRSRL-RALPWRLLAKALSCCSTDSEPSF 241
P PP P + + R + W+ A +CC D P F
Sbjct: 82 PPPPPPKQEKAKRVVRWKCAAGCGACCKLDKGPDF 116
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Frame = -3
Query: 390 PCGAPRPCARCSASTVP----KP---PWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 232
P +P A+C A VP +P P P R + L + CS+D E SF+A
Sbjct: 34 PPPSPPEAAKCCADGVPVVMGEPLGAPAPPRESWNSGVLSCLGRNDEFCSSDVEGSFEAF 93
Query: 231 LKSC 220
K C
Sbjct: 94 TKQC 97
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 24 PPHSVSRQHIMAAKFVVLFACIALAQGSDGATR 122
PPH VSR + AA F A A A+G D R
Sbjct: 41 PPHQVSRPWLPAAGFRSSAAASAAARGDDYGRR 73
>06_01_0008 + 141405-142421
Length = 338
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -3
Query: 384 GAPRPCARCSASTVPKPPWPCR---SRLR-ALPWRLLAKALSCCSTDSEPSFQ 238
G+ RP A SAS P P P R R R +LPW L A A + S P+ Q
Sbjct: 259 GSHRPAAPASASASPSPAPPPRLAERRFRISLPWPLRA-AFGGQAESSNPTNQ 310
>02_04_0193 -
20801959-20802583,20803372-20803448,20803530-20803646,
20804147-20804250,20804359-20804428,20804547-20804644,
20804747-20804840,20805269-20805359,20805453-20805545,
20805635-20805960,20806162-20806641
Length = 724
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 259 RAATAQRLRQESPGQRSETRTARPRRLWN 345
R T Q +RQE QR ++ + + LWN
Sbjct: 361 RGDTVQIIRQELKSQRRHVKSLKKKSLWN 389
>01_01_0178 + 1514878-1515417
Length = 179
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 342 PKPPWPCRSRLRALPWRLLAKALSC 268
P PPW C +L+ P R+ C
Sbjct: 43 PSPPWDCCDKLKQSPLRIWPPKYKC 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,459
Number of Sequences: 37544
Number of extensions: 207547
Number of successful extensions: 948
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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