Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N13
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-1|AAC67412.1|  364|Caenorhabditis elegans Btb and math ...    27   7.6  
U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    27   10.0 
AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    27   10.0 

>AF098504-1|AAC67412.1|  364|Caenorhabditis elegans Btb and math
           domain containingprotein 25 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = -2

Query: 133 SRERRVAPS-----LPWARAMQAKRTTNLAAMMCCRETE 32
           + E+R  PS     +PW   +Q +  ++LAA +CC+++E
Sbjct: 22  NHEKRYGPSQVHFDIPWRMKIQ-RSGSDLAAFLCCQKSE 59


>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 288 LAKALSCCSTDSEPSFQALLKSCASFDLVSELNC 187
           L K  S   T  E  F+AL+  CA   L+ EL C
Sbjct: 117 LYKGYSNFHTVQEKIFKALVDMCAEARLIGELEC 150


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 294 SRAALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEK 410
           S  +LG+ +    + L + +Q++ER A+ELR    ++++
Sbjct: 56  STGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDR 94


>AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical
           protein M151.2 protein.
          Length = 675

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 327 AKEALEQSRQNIERTAEELRKAHPDVEK 410
           AKEAL   +QN ER   EL+K   ++++
Sbjct: 178 AKEALAAEKQNSEREKMELKKLTEELQR 205


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 294 SRAALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEK 410
           S  +LG+ +    + L + +Q++ER A+ELR    ++++
Sbjct: 56  STGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDR 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,213,548
Number of Sequences: 27780
Number of extensions: 150324
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)