Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N13
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   3.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +1

Query: 136 FKDIEHHTKAVP*DFRTTV*LAHQVKGRTGLQQGLEGRLRVRAATAQRLRQESPGQRSET 315
           +K +E HT+      R    +    K    L+QG++  L +  A     R  SP + +E+
Sbjct: 332 YKQLELHTED-----RAAESILEPAKKGFKLKQGIQFHLYINTAPCGDARIFSPHEENES 386

Query: 316 RTARPRR 336
               P R
Sbjct: 387 VDKHPNR 393


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 252 EPSFQALLKSCASFDLVSELN 190
           EP    +  + ASFD +SE+N
Sbjct: 59  EPLLVGMDLTIASFDAISEVN 79


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  AKFVVLFACIALAQGSDGATRRSRLLQ 140
           A+ VVLF     A+G   A RRS L Q
Sbjct: 197 ARAVVLFTRAEDARGILEAARRSNLSQ 223


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  AKFVVLFACIALAQGSDGATRRSRLLQ 140
           A+ VVLF     A+G   A RRS L Q
Sbjct: 287 ARAVVLFTRAEDARGILEAARRSNLSQ 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,828
Number of Sequences: 438
Number of extensions: 1756
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)