Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N09
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            147   4e-36
10_07_0174 + 13815478-13815903                                        146   1e-35
03_02_0943 + 12598616-12598789,12599790-12601250                       31   0.58 
06_01_0889 - 6807449-6809257                                           29   2.3  
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150...    27   5.4  
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    27   5.4  
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542     27   7.2  
03_06_0659 - 35345095-35345135,35345982-35347365                       27   9.5  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  147 bits (356), Expect = 4e-36
 Identities = 71/118 (60%), Positives = 93/118 (78%)
 Frame = +1

Query: 58  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 237
           RTKTVKK +  +IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++  
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRG 64

Query: 238 QVRGISIKLQEEERERRDNYVPXVSALEHDIIEVDPDTXDMLKMLDFNNINGLQLTQP 411
            VRGIS+KLQEEERERR ++VP  SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  146 bits (353), Expect = 1e-35
 Identities = 69/124 (55%), Positives = 93/124 (75%)
 Frame = +1

Query: 58  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 237
           RTKTVKK +  +IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++  
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRG 64

Query: 238 QVRGISIKLQEEERERRDNYVPXVSALEHDIIEVDPDTXDMLKMLDFNNINGLQLTQPAT 417
            VRGIS+KLQEEERERR ++VP  SALE + I VD +T +ML  L   ++ G++  Q  +
Sbjct: 65  PVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVS 124

Query: 418 QGGY 429
              Y
Sbjct: 125 APTY 128


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +1

Query: 196 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPXVSALEHDIIEVDPDTXDMLKMLD 375
           A +++HL+RR+        + K Q EE ++  +     + LEHD+I  + +T D+LK L+
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 226 LRHSQVRGI-SIKLQEEERERRDNYVPXVSALEHDIIEVDPD 348
           LRH Q R I ++ +    R R + YVP      HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>04_04_0448 -
           25314042-25314183,25314271-25314321,25314437-25315033,
           25315151-25315353
          Length = 330

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 434 PP*PPWVAGCVSCR----PLILLKSSIFNISLVSGSTSMMSC 321
           PP PP     VS R    PL+ L+ +  N S VSGS S  +C
Sbjct: 5   PPSPPRSLTSVSLRTPLSPLLFLRPASCNPSAVSGSCSSGAC 46


>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 431 P*PPWVAGCVSCRPLILLKSSIF 363
           P PPW+  C S   L+L   S +
Sbjct: 387 PIPPWIRNCTSLESLVLFNCSFY 409


>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
          Length = 138

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 434 PP*PPWVAGCVSCRP 390
           PP PP   GC SCRP
Sbjct: 97  PPPPPCCPGCNSCRP 111


>03_06_0659 - 35345095-35345135,35345982-35347365
          Length = 474

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 393 PATNTASYPGWLW 431
           PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,107
Number of Sequences: 37544
Number of extensions: 179839
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)