Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N09
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   153   4e-38
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    30   0.92 
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   2.8  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   2.8  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   3.7  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    28   3.7  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    27   4.9  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  153 bits (372), Expect = 4e-38
 Identities = 73/111 (65%), Positives = 88/111 (79%), Gaps = 3/111 (2%)
 Frame = +1

Query: 58  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 237
           RTKTVKKA+ ++IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+   
Sbjct: 5   RTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERG 64

Query: 238 QVRGISIKLQEEERERRDNYVPXVSALEHD---IIEVDPDTXDMLKMLDFN 381
            VRGISIKLQEEERERRDNY+P +S ++      I+VD DT DMLK   FN
Sbjct: 65  PVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 176 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSXKCL 313
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  +  C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 172 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 288
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 172 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 288
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 198 WICHTFNEASQTLASARNLYQTSGRGA 278
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 194 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSXKCLLSNMTSS 334
           +L L H+      TRKCEE L +F ++ ++    ++ K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 244 RGISIKLQEEERERRDN----YVPXVSALEHDIIEVDPDTXDMLKMLDFNNINGLQL 402
           RG  ++  E+ + R D+    Y    +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 349 TXDMLKMLDFNNINGLQL 402
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,115,378
Number of Sequences: 27780
Number of extensions: 161233
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)