Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N06
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 31 0.11
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 31 0.11
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 31 0.11
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 29 0.44
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 29 0.44
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 29 0.77
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 27 2.3
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 27 2.3
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 26 4.1
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 4.1
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.1
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 4.1
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 4.1
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.1
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 5.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 9.5
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 243 KTKDSILITGCGNSSLSADLYDVGYVNITNVDVSE-VVIKQMKNVNKARTNMKFMCMDAT 419
K +++L GC + + L +GY + +D+SE + K + + ++N+ F D +
Sbjct: 8 KLHENVLDAGCEPNRNARYLASLGY-KVVGIDISERAISKAIDKTSSEKSNVNFNQRDFS 66
Query: 420 RMSFEXEAFNVVLXKGTLDALM 485
R++ F+ V+ G +++
Sbjct: 67 RLNEFKGHFDTVIDIGCFHSIL 88
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 243 KTKDSILITGCGNSSLSADLYDVGYVNITNVDVSE-VVIKQMKNVNKARTNMKFMCMDAT 419
K +++L GC + + L +GY + +D+SE + K + + ++N+ F D +
Sbjct: 8 KLHENVLDAGCEPNRNARYLASLGY-KVVGIDISERAISKAIDKTSSEKSNVNFNQRDFS 66
Query: 420 RMSFEXEAFNVVLXKGTLDALM 485
R++ F+ V+ G +++
Sbjct: 67 RLNEFKGHFDTVIDIGCFHSIL 88
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 243 KTKDSILITGCGNSSLSADLYDVGYVNITNVDVSE-VVIKQMKNVNKARTNMKFMCMDAT 419
K +++L GC + + L +GY + +D+SE + K + + ++N+ F D +
Sbjct: 8 KLHENVLDAGCEPNRNARYLASLGY-KVVGIDISERAISKAIDKTSSEKSNVNFNQRDFS 66
Query: 420 RMSFEXEAFNVVLXKGTLDALM 485
R++ F+ V+ G +++
Sbjct: 67 RLNEFKGHFDTVIDIGCFHSIL 88
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 264 ITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNVNKAR-TNM 395
I GC NSSL Y G V I + + IK + N+N + TNM
Sbjct: 47 IAGCANSSLEIVNYIPGSVGIEKLIEAVPAIKAIANINGVQVTNM 91
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 264 ITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNVNKAR-TNM 395
I GC NSSL Y G V I + + IK + N+N + TNM
Sbjct: 47 IAGCANSSLEIVNYIPGSVGIEKLIEAVPAIKAIANINGVQVTNM 91
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 231 NKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVIK--QMKNVNK 380
N ++ +L GCG LS G ++ VD+SE++ K Q+ VNK
Sbjct: 49 NPHLFRDKIVLDVGCGTGILSMFCARAGAKHVYGVDMSEIIHKAVQIVEVNK 100
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 231 NKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKN 371
NK+I ++L GCG LS G + VD S+++ + N
Sbjct: 250 NKHIFAGKTVLDVGCGTGILSMFCAKAGAKKVYAVDNSDIIQMAISN 296
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 270 GCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNVNK 380
G SSLS + G+ I + VSE VI KNVNK
Sbjct: 2 GSDGSSLSPKVSQPGHTEIVD-HVSEKVITNGKNVNK 37
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 204 EYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVG 314
E+ ELC + +KY T ++ I N++L ++++ G
Sbjct: 500 EFYELCKKWDKYDDTLMNVFIKNTKNTALPDEVFEPG 536
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 4.1
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +3
Query: 234 KYIKTKDSILITGCGNSSLSADL--Y----DVGYVNITN--VDVSEVVIKQMKNVNKAR- 386
KY+K D IL GCG +++ Y +V V + +D +E +++ + + K +
Sbjct: 36 KYVKKTDRILDVGCGPGTITVGFPKYVPEGEVIGVEPSQELLDKAEEALRKEETLKKEKI 95
Query: 387 TNMKFMCMDATRMSFEXEAFNVVLXKGTLDALMPDATEXTNAIIXKYFSEIKRVLKLGGR 566
N F ++ F F++V L L + A++ E+KRV K GG
Sbjct: 96 NNCSFRLGSIYKLPFPDNTFDIVNTHQVLVHLQ----DPVAALV-----ELKRVTKPGG- 145
Query: 567 FVC 575
+VC
Sbjct: 146 YVC 148
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 109 IYYREVTKNSAKKIIGTNSSXNGEIKHSNGTA 204
I YR V + K I TN N I+HS+G A
Sbjct: 846 IQYRHVLDVNYKPKIVTNEVENENIEHSDGAA 877
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 396 SYWFWLCLRFS 364
SYW W CL FS
Sbjct: 112 SYWIWTCLHFS 122
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 396 SYWFWLCLRFS 364
SYW W CL FS
Sbjct: 112 SYWIWTCLHFS 122
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 396 SYWFWLCLRFS 364
SYW W CL FS
Sbjct: 84 SYWIWTCLHFS 94
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 396 SYWFWLCLRFS 364
SYW W CL FS
Sbjct: 112 SYWIWTCLHFS 122
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 99 FIMNLLPRSHKEFSEKDYWNKFFXKRGNKAFEWYGEYL 212
FI L+ +S + S+ D WN++ AF W G +L
Sbjct: 201 FIGGLMAKSSMK-SQSDIWNEYTSGNWLMAFIWVGLFL 237
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +2
Query: 284 KFERGPIRCWIC--KYNKCGC 340
K+E+ RCWIC +Y+K C
Sbjct: 6 KYEKSSARCWICYEEYDKKLC 26
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 468 TLDALMPDATEXTNAIIXKYFSEIKRVLKLGGRFVC-ISLLQ 590
TL AL+P+ TE NAI I +++G + + LLQ
Sbjct: 763 TLFALVPNTTEFMNAISFALNENIALSMEIGSAYALQVCLLQ 804
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 213 LNIRRTIRMLYFPVX*RICSNNLFR*ILC 127
LN++ T+ + FP RICSN+LF +LC
Sbjct: 693 LNVQ-TVSVKGFPR--RICSNSLFYFVLC 718
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,650
Number of Sequences: 5004
Number of extensions: 43050
Number of successful extensions: 133
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -