Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N06
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329... 126 2e-29
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811... 95 4e-20
05_04_0192 + 18936955-18937168,18937385-18937498,18937588-189376... 85 3e-17
11_06_0082 + 19891184-19891332,19891349-19891445,19891584-198917... 68 6e-12
01_06_0299 + 28305447-28305729,28305892-28306104,28306915-283070... 42 3e-04
07_03_1543 + 27582033-27582387,27583638-27583706,27583790-275838... 42 6e-04
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082... 35 0.049
01_06_0361 + 28733493-28733523,28733743-28733870,28733982-287340... 33 0.20
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 32 0.46
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 30 1.8
04_04_1544 - 34273909-34274220,34274340-34274769,34274933-342750... 29 3.2
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866 29 4.2
>04_03_0669 +
18531419-18531820,18532589-18532690,18532882-18532948,
18533530-18533708,18533792-18534052,18535324-18535407,
18535517-18535564,18535654-18535718,18536849-18536897,
18538132-18538372,18539623-18539744,18539942-18540022,
18540094-18540168,18540408-18540550,18540662-18540812,
18540915-18541097
Length = 750
Score = 126 bits (304), Expect = 2e-29
Identities = 71/175 (40%), Positives = 101/175 (57%), Gaps = 11/175 (6%)
Frame = +3
Query: 132 EFSEKDYWNKFFXKRGN-KAFEWYGEYLELCGQLNKYIK---------TKDSILITGCGN 281
+F+ ++ W+KFF RG +FEWY E+ +L L + IL+ GCG+
Sbjct: 25 DFTSRENWDKFFALRGTGDSFEWYAEWDDLRAPLLSLLHGGGGAEGGGKAPEILVPGCGS 84
Query: 282 SSLSADLYDVGYVNITNVDVSEVVIKQM-KNVNKARTNMKFMCMDATRMSFEXEAFNVVL 458
S LS LYD G+ +TNVD S V++ M + +AR M++ MD T M F +F+V+L
Sbjct: 85 SVLSERLYDAGFRRVTNVDFSRVLVADMLRRHARARPEMRWRVMDMTDMQFTDGSFDVIL 144
Query: 459 XKGTLDALMPDATEXTNAIIXKYFSEIKRVLKLGGRFVCISLLQSHILAKLMEGF 623
KG LDALM E + KY +E KRVLK GG+F C++L +SH+LA L+ F
Sbjct: 145 DKGGLDALMEP--EAGTKLGMKYLNEAKRVLKSGGKFACLTLAESHVLALLLSEF 197
>08_02_1260 -
25680618-25680677,25680763-25680893,25681085-25681163,
25681250-25681280,25681358-25681410,25681441-25681511,
25681610-25681678,25681776-25681889,25683101-25683293
Length = 266
Score = 95.1 bits (226), Expect = 4e-20
Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Frame = +3
Query: 135 FSEKDYWNKFFXKRGNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVG 314
+ E YW++ + K F+WY +Y L L Y++ +L+ GCGNS ++ D G
Sbjct: 16 YGEAWYWDERYRKEAGP-FDWYQKYPALAPLLAVYVRRHHRLLLAGCGNSVFGENMVDDG 74
Query: 315 YVNITNVDVSEVVIKQMKNVNKARTNMKFMCMDATRMS-FEXEAFNVVLXKGTLDALM 485
Y +I N+D+S VVI QMK + + ++K+M MD M+ FE +F+ V+ KGTLD++M
Sbjct: 75 YQDIVNIDISSVVIDQMKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIM 132
>05_04_0192 +
18936955-18937168,18937385-18937498,18937588-18937656,
18937807-18937826,18937932-18937984,18938082-18938139,
18938338-18938367,18938468-18938719
Length = 269
Score = 85.4 bits (202), Expect = 3e-17
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Frame = +3
Query: 177 GNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVI 356
G F+WY Y L L + +L+ GCGNS LS D+ GY + NVD+S VVI
Sbjct: 36 GGAFFDWYQAYPALRPLLRARLPASSRVLMLGCGNSLLSEDMVKDGYEEVVNVDISSVVI 95
Query: 357 KQMKNVNKARTNMKFMCMDATRMS-FEXEAFNVVLXKGTLDALMPDATEXTNAIIXKYFS 533
+QM+ + + + MD MS F F+ VL KGTLDA+M A K +
Sbjct: 96 EQMREKHVDIPQLTYFQMDVRDMSLFGDGTFDCVLDKGTLDAMMCGDDAPLGA--SKMLA 153
Query: 534 EIKRVLKLGGRFVCI 578
E+ R+L+ GG ++ +
Sbjct: 154 EVARILRPGGIYMLV 168
>11_06_0082 +
19891184-19891332,19891349-19891445,19891584-19891725,
19891853-19891935,19892356-19892490,19892759-19892863,
19893043-19893168
Length = 278
Score = 68.1 bits (159), Expect = 6e-12
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Frame = +3
Query: 189 FEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVN-ITNVDVSEVVIKQM 365
+EW+ ++ L + S+L GCGNS L +L G IT VD+S V +++M
Sbjct: 60 YEWFKDFSHFRHLLAPLLSPSISVLEVGCGNSRLGEELLREGVAGGITCVDLSPVAVQRM 119
Query: 366 KN--VNKARTNMKFMCMDATRMSFEXEAFNVVLXKGTLDALMPDATEXTNA------IIX 521
++ + ++ + D + F+ E+F++V+ KGT+D L D+ + N +
Sbjct: 120 RDRLAEQGTEGVEVVVADMLDLPFDRESFDLVIEKGTMDVLFVDSGDPWNPNPTTVDNVM 179
Query: 522 KYFSEIKRVLKLGGRFVCISLLQSHILAKLME 617
K I +VLK G FV I+ Q H + E
Sbjct: 180 KMLEGIHKVLKPEGIFVSITFGQPHFRRRFFE 211
>01_06_0299 +
28305447-28305729,28305892-28306104,28306915-28307043,
28307677-28307857,28308329-28308425,28309157-28309260,
28309734-28309785,28310040-28310252
Length = 423
Score = 42.3 bits (95), Expect = 3e-04
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Frame = +3
Query: 258 ILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNV--NKARTNMKFMCMDATRMSF 431
+L G GN L L G+ N+T D SE I+ KN+ T++ F+ D
Sbjct: 251 VLDVGTGNGLLLQALAKQGFSNLTGTDYSEGAIELAKNLAARDGFTSINFLVDDILETKL 310
Query: 432 EXEAFNVVLXKGTLDALMPDATEXTNAIIXKYFSEIKRVLKLGGRFVCIS 581
+ + F +V KGTLDA+ ++ Y+ + +++ GG V S
Sbjct: 311 DRK-FKIVTDKGTLDAIGLHPDGRIKRVM--YWESVSNLVEPGGIVVVTS 357
>07_03_1543 +
27582033-27582387,27583638-27583706,27583790-27583809,
27584186-27584267,27584512-27584711
Length = 241
Score = 41.5 bits (93), Expect = 6e-04
Identities = 14/68 (20%), Positives = 34/68 (50%)
Frame = +3
Query: 135 FSEKDYWNKFFXKRGNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVG 314
+ + +YW+ + + G ++WY Y L + ++ + +L+ GCG++ + D D+
Sbjct: 69 YGKAEYWDARYVEEGGAPYDWYQRYAALRPFVRRFAPPESRVLMIGCGSAHMQMDARDMS 128
Query: 315 YVNITNVD 338
+ + D
Sbjct: 129 IFSDESFD 136
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 402 MCMDATRMS-FEXEAFNVVLXKGTLDALM 485
M MDA MS F E+F+ + KGTLD+LM
Sbjct: 120 MQMDARDMSIFSDESFDCAIDKGTLDSLM 148
>05_07_0008 -
27007919-27007944,27008070-27008127,27008218-27008292,
27008417-27008470,27008574-27008840,27008913-27009193,
27009268-27009409,27009491-27009601,27009975-27010013,
27010173-27010310,27010415-27010552,27011438-27011562,
27011702-27011723
Length = 491
Score = 35.1 bits (77), Expect = 0.049
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +3
Query: 255 SILITGCGNSSLSADLY-DVGYVNITNVDVSEVVIKQMKNVNKARTNMKFMCMDATR--M 425
S+L G G + +L + G+V +D E VIK+ +N+N N+ FMC D T +
Sbjct: 61 SVLELGAGIGRFTGELAKEAGHV--LALDFIESVIKKNENINGHHKNITFMCADVTSPDL 118
Query: 426 SFEXEAFNVVLXKGTLDALMPDATEXTNAIIXKY---FSEIKRVLKLGGRF 569
+ E + +++ L L + E + K+ F E K GG +
Sbjct: 119 TIEDNSIDLIFSNWLLMYLSDEEVEKLVGRMVKWLKIFKECHSYDKDGGSY 169
>01_06_0361 +
28733493-28733523,28733743-28733870,28733982-28734044,
28735074-28735211,28735357-28735494,28735700-28735843,
28736065-28736175,28736260-28736401,28736469-28736779,
28737057-28737218,28737313-28737366,28737472-28737546,
28737636-28737731
Length = 530
Score = 33.1 bits (72), Expect = 0.20
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Frame = +3
Query: 198 YGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNVN 377
Y Y+ + L Y S+L G G + +L ++ +D E VIK+ +++N
Sbjct: 69 YSSYVVILSLLPPY--EGKSVLELGAGIGRFTGELVKTAG-HVLAMDFIESVIKKNESIN 125
Query: 378 KARTNMKFMCMDAT--RMSFEXEAFNVVLXKGTLDALMPDATEXTNAIIXKYFSEIKRVL 551
N FMC D T + E + +++ L L + E K + R L
Sbjct: 126 GHHKNASFMCADVTCPDLMIEDNSIDLIFSNWLLMYLSDEEVE-------KLVKRMVRWL 178
Query: 552 KLGG 563
K+GG
Sbjct: 179 KVGG 182
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 516 IXKYFSEIKRVLKLGGRFVCISLLQSHI 599
I K SE RVLK GGRF+C+ L SH+
Sbjct: 221 IEKALSEAYRVLKRGGRFLCLEL--SHV 246
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +3
Query: 105 MNLLPRSHKEFSEKDYWNKFFXKRGNKAFEWYGEYLELCGQLNKYIK-----TKDSILIT 269
+ L+ R + D W++F+ K G K Y+E Y T ++ +
Sbjct: 285 LRLMERFGVKAEHSDSWDRFYIKGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTVTVQ 344
Query: 270 GCGNSSLSADL 302
GCG +SL D+
Sbjct: 345 GCGTTSLQGDV 355
>04_04_1544 -
34273909-34274220,34274340-34274769,34274933-34275030,
34275178-34275280,34275386-34275471,34275590-34275677,
34275773-34275886,34275975-34276179,34276530-34276557
Length = 487
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 369 NVNKARTNMKFMCMDATRMSFEXEAFN----VVLXKGTLDALMPDATEXTNAIIXKYFSE 536
N++KA N + M A R + E E + V L L ++PDATE T ++ ++ S+
Sbjct: 336 NLHKATGNPVLVYMAAGRFAQEVEKLSDKEAVDLVMSHLKKMLPDATEPTKYLVSRWGSD 395
>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
Length = 785
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/49 (20%), Positives = 27/49 (55%)
Frame = +3
Query: 336 DVSEVVIKQMKNVNKARTNMKFMCMDATRMSFEXEAFNVVLXKGTLDAL 482
++ E++ ++ + + ++ +CM+A R++ E E + + G DA+
Sbjct: 560 EIGEMMSREFTGMEDQPSELEVVCMEARRLAIEREESSTEIDSGDEDAI 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,838,360
Number of Sequences: 37544
Number of extensions: 235659
Number of successful extensions: 521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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