Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N05
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   2.3  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    27   3.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   4.0  
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    25   6.9  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.1  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   9.1  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 354 QIESDSDNGETEQVTPTTPSKGKNAXKK 437
           ++ES S N ET  VTPT  ++G    +K
Sbjct: 23  KVESASGNQETSNVTPTKENEGYEELEK 50


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 364 LSICKFWHLLETSLIDE-LLNTMVG 293
           + IC+ W L E +++DE L+N ++G
Sbjct: 196 IEICELWSLEELAMLDENLINRLLG 220


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 262 DFLGVRLGESTLFSFI-ALSLDVFCGTDDVE-TTDVVGSLHAASILNELWLD 113
           D L ++LGE+TL SFI A  L       DV+ T D+V  ++   I+NE   D
Sbjct: 761 DRLSLQLGENTLQSFIKAADLGASYVELDVQMTKDMVPVVYHDFIVNETGTD 812


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 572 FYPTDYTIVCKYQLYVFRKS 631
           FYP D+T VC  ++  F ++
Sbjct: 39  FYPLDFTFVCPTEIVAFSEA 58


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 282 EVTVPTMVFNNSS-INDVSNKCQNLQIESDSDNGETEQV 395
           +VT  T + N S+    V  K +NL  +SD  N  T+ +
Sbjct: 360 DVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSI 398


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 295 GTVTSDLCFFFDFLGVRLGESTLFSFIALSLDVF 194
           G  T++L +FF  LGV LG   +   I +  + F
Sbjct: 770 GRDTNNLAWFFGILGVLLGSIAIGWIITMRYNAF 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,549
Number of Sequences: 5004
Number of extensions: 47326
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)