Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N05
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024763-2|AAK68885.2|  411|Caenorhabditis elegans Hypothetical ...    36   0.032
AC024763-1|AAK68886.1|  411|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    29   2.1  
U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical p...    27   8.5  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   8.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   8.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   8.5  

>AC024763-2|AAK68885.2|  411|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.4a protein.
          Length = 411

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 28/108 (25%), Positives = 45/108 (41%)
 Frame = +3

Query: 309 NNSSINDVSNKCQNLQIESDSDNGETEQVTPTTPSKGKNAXKKERLKKLEIXXXXXXXXX 488
           N+SS +    K + +  E +  +  T +   T  S GKN    E+LK +           
Sbjct: 10  NDSSKHKSDVKTEKVGSEIEKASNPTLEAYFTRISDGKNEISAEKLKSI----------- 58

Query: 489 XXXRVQNSQYLFNYFGSPTNSTFSVHEYFTQQITPLYASTSSTYLENL 632
              +   S  L  Y    TNS    H+ F  + TPLY +++  Y++ L
Sbjct: 59  --FQQDLSGSLMKYLTGDTNSNLVTHQQFMDKFTPLYGTSTDIYVKIL 104


>AC024763-1|AAK68886.1|  411|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.4b protein.
          Length = 411

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 519 LFNYFGSPTNSTFSVHEYFTQQITPLYASTSSTYLENL 632
           L  Y    TNS    H+ F  + TPLY +++  Y++ L
Sbjct: 67  LMKYLTGDTNSNLVTHQQFMDKFTPLYGTSTDIYVKIL 104


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 610 LVLAYN--GVICWVKYSCTENVLFVGDPK*LNKYCEFCTLFVLLKLFTGTVGI 458
           LVL+ N  GVIC + +SC  N+  +   K  N+   FC  + L  ++  TV I
Sbjct: 10  LVLSINLFGVICSI-FSCIMNIFILKKEKKKNEMVLFCFRYFLAAVYGLTVAI 61


>U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical
           protein F32E10.2 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 324 NDVSNKCQNLQIESDSDNGETEQVTPTTPSKGKN 425
           NDV  + + +Q + D D+ + E+V  T P + K+
Sbjct: 227 NDVIERVEEIQEDEDDDDEQREEVVTTAPVETKS 260


>Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 390 QVTPTTPSKGKNAXKKERLKKL 455
           ++ PTTPS GK+  KKE L  L
Sbjct: 14  RMPPTTPSSGKSRPKKETLHYL 35


>Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 390 QVTPTTPSKGKNAXKKERLKKL 455
           ++ PTTPS GK+  KKE L  L
Sbjct: 14  RMPPTTPSSGKSRPKKETLHYL 35


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 309  NNSSINDVSNKCQNLQIESDSDNGETEQVTPTTPSKGKNAXKKERLK 449
            ++SSI+  S+  + +   + S   ET++V   T SK K   KK++L+
Sbjct: 9525 SDSSISQKSDTSKTVAESAGSSESETQKVADAT-SKQKETDKKQKLE 9570


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 309  NNSSINDVSNKCQNLQIESDSDNGETEQVTPTTPSKGKNAXKKERLK 449
            ++SSI+  S+  + +   + S   ET++V   T SK K   KK++L+
Sbjct: 9545 SDSSISQKSDTSKTVAESAGSSESETQKVADAT-SKQKETDKKQKLE 9590


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 309  NNSSINDVSNKCQNLQIESDSDNGETEQVTPTTPSKGKNAXKKERLK 449
            ++SSI+  S+  + +   + S   ET++V   T SK K   KK++L+
Sbjct: 9545 SDSSISQKSDTSKTVAESAGSSESETQKVADAT-SKQKETDKKQKLE 9590


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,975
Number of Sequences: 27780
Number of extensions: 265575
Number of successful extensions: 843
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)