Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N05
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 277 LCFFFDFLGVRLGESTLFSFIALSLD 200
           +C F+  + V    S++F+ +A+S+D
Sbjct: 258 VCDFYIAMDVTCSTSSIFNLVAISID 283


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 294 PTMVFNNSSINDVSNKCQNLQIESDSDNGETEQVTPTTPSKGKN 425
           P M F+ +    V N  +  +  S     E E + P TP +G+N
Sbjct: 11  PLMEFSATLDTVVPNSGELFKAGSAEQPKEQEPLPPVTPPQGEN 54


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 315 SSINDVSNKCQNLQIESDSDNGETEQVTPTTPSK 416
           +S+   S    ++ +E D  N    Q+T  TP+K
Sbjct: 857 TSLPASSTSINSITVEKDVINDVKTQITTNTPAK 890


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 286 TSDLCFFFDFLGVRLGESTLFSFIALSLDVFCG-TDDVETTDVVGSLHAASILNELWL 116
           T+D C  +  L V    +++ +   +SLD +   TD       +    AA ++  +W+
Sbjct: 115 TTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITDPFTYPSKMSRRRAAVLIAIVWI 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,495
Number of Sequences: 438
Number of extensions: 3266
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)