Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M24
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 32 0.18
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 31 0.41
07_03_1124 + 24157441-24157483,24157989-24158020,24158135-241583... 29 1.2
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 29 1.6
08_02_0963 + 23068851-23069042,23069262-23069414,23069590-230696... 29 1.6
06_01_0751 + 5630036-5630233,5630623-5630718,5631420-5631629,563... 28 3.8
07_03_1119 - 24118565-24118625,24119868-24119914,24120101-241201... 27 6.6
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395... 27 6.6
01_01_0890 + 7014131-7014168,7014443-7014532,7015468-7015698,701... 27 6.6
12_02_0049 + 12890684-12890876,12891160-12891176 27 8.7
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 27 8.7
03_01_0136 + 1069136-1069292,1070783-1071060,1071246-1071602,107... 27 8.7
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 32.3 bits (70), Expect = 0.18
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 168 SLIWH---GTDAIMWSLAPNTHKCLKEELHANVLXAGXYDV 281
+L+W G A+ + P+ KC+ EE+ +NV+ G Y V
Sbjct: 16 ALLWWMAAGAGAVWLEIPPSATKCVSEEIQSNVVVIGDYSV 56
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 31.1 bits (67), Expect = 0.41
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 289 YRAQRVDYIIKDSKGHILSXKDTVTKGKFSFVTXNYDMFEVCFISKVP 432
Y VD ++KD G + T KF F+ + CF +K P
Sbjct: 62 YSEDGVDLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSP 109
>07_03_1124 +
24157441-24157483,24157989-24158020,24158135-24158353,
24158553-24158634,24158726-24158898
Length = 182
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 129 TINMEVQYLVLLLSLIWHGTDAIMWSLAPNTHKCLKEELH-ANVLXAGXYDVTEIQG 296
T+ M LVL L+++WH + + L H C + L+ A + AG D + G
Sbjct: 84 TVGMVHLVLVLHLTMLWHMEERVDNLLHRGGHLCRDQSLNDAEAIEAGWLDCLRVVG 140
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 289 YRAQRVDYIIKDSKGHILSXKDTVTKGKFSFVTXNYDMFEVCFISKVP 432
Y VD +++D G+ + KF F+ + CF +K P
Sbjct: 61 YTEDGVDLVVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFCFTNKSP 108
>08_02_0963 +
23068851-23069042,23069262-23069414,23069590-23069666,
23069744-23069762,23070182-23070202
Length = 153
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 153 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLXAGXYDV 281
L L L + +A+ L+ KC E + +NV+ G YD+
Sbjct: 8 LALALWCLVADGEAVWMELSTTATKCFSERIQSNVVVIGDYDI 50
>06_01_0751 +
5630036-5630233,5630623-5630718,5631420-5631629,
5631735-5631811,5632204-5632222,5632304-5632348
Length = 214
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 144 VQYLVLLLSLIWHG--TDAIMWSLAPNTHKCLKEELHANVLXAGXY 275
V +V++++L+ G +A+ L P KC+ EE+ NV+ Y
Sbjct: 4 VAAMVVVVALLLGGGAVEAVWLDLPPTGTKCVSEEIQPNVVVLADY 49
>07_03_1119 -
24118565-24118625,24119868-24119914,24120101-24120160,
24120715-24120822,24121628-24121831
Length = 159
Score = 27.1 bits (57), Expect = 6.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 55 DYVCFPGHKCYEFGFIY 105
+Y+CFP H C + F Y
Sbjct: 78 EYICFPEHLCTCYSFFY 94
>02_01_0541 -
3950336-3950353,3950660-3951061,3951174-3951431,
3951554-3951754,3951861-3952203,3952286-3952344,
3952757-3953082,3953283-3953745,3954180-3954794,
3955600-3955896
Length = 993
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 292 RAQRVDYIIKDSKGHILSXKDTVTKGK 372
RAQ V Y+I D G + K TVT K
Sbjct: 657 RAQNVKYVIFDKTGTLTQGKATVTSTK 683
>01_01_0890 +
7014131-7014168,7014443-7014532,7015468-7015698,
7015931-7015944,7016569-7016925,7017033-7017379
Length = 358
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 2 KTVDDVSQLIGLFDVKLEIMFVFPVINVMNSALFIARXIIYNHNKHGGTISRVVT 166
K D + +V E PV+ N+ +F + I NH G +S + T
Sbjct: 208 KDYDSIEDQRNRIEVAAEYEISLPVLKTTNNDIFPSASIFANHGISNGNLSALST 262
>12_02_0049 + 12890684-12890876,12891160-12891176
Length = 69
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 120 YITTINMEVQYLVLLLSLIWHGTDAIMWSLAPNTHKCLK 236
YI +E++ LL ++ W+ W A N CL+
Sbjct: 26 YINEKRIELEARALLATIAWYRKQTDQWLAATNAINCLE 64
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 153 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLXAGXYDV 281
++LLLS A+ + L KC+ +E+ N + G Y V
Sbjct: 24 VLLLLSAAPRTARALRFDLESGHTKCISDEIKVNSMVVGKYHV 66
>03_01_0136 +
1069136-1069292,1070783-1071060,1071246-1071602,
1071706-1072119,1072221-1072302,1072429-1073093
Length = 650
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 93 EFITFMTGKTNIISNFTSNRPMSWLTSST 7
EF++ T +I+ TS+ P WL +ST
Sbjct: 313 EFLSVATASQELINGSTSSYPEMWLGAST 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,336,706
Number of Sequences: 37544
Number of extensions: 184845
Number of successful extensions: 326
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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