Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M24
(435 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 38 0.004
U29097-7|AAA68409.2| 344|Caenorhabditis elegans Serpentine rece... 29 1.9
Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 28 3.4
U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical pr... 28 3.4
U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein. 28 3.4
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 27 5.9
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 27 5.9
U41011-2|AAM98042.1| 163|Caenorhabditis elegans Hypothetical pr... 27 7.8
U41011-1|AAA82285.2| 166|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical ... 27 7.8
AC199172-2|ABO33275.1| 305|Caenorhabditis elegans F-box a prote... 27 7.8
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 37.5 bits (83), Expect = 0.004
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 316 IKDSKGHILSXKDTVT--KGKFSFVTXNYDMFEVCFISKVPS 435
+ D++GH L ++ KGKF+F YD+FE+C + P+
Sbjct: 57 VTDTRGHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPA 98
Score = 35.1 bits (77), Expect = 0.022
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 153 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLXAGXYDVTE 287
LV+ LS I ++ + + P KCLKEE+H NV+ G Y+ ++
Sbjct: 4 LVIFLSAIVLA-HSLRFYVPPKEKKCLKEEIHKNVVVTGEYEFSQ 47
>U29097-7|AAA68409.2| 344|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 27 protein.
Length = 344
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 44 VKLEIMFVFPVINVMNSALFIARXIIYNHNKH--GGTISRVVTELNLAWN*CDYVELGAE 217
+K+ +FVF +I + F A ++ NHN + G I ++T LN N ++E+
Sbjct: 31 MKINFVFVFILIFLTFYLSFKAARVLKNHNVYSKGSQILLMITLLNANLNQLIFLEIRIR 90
Query: 218 H 220
H
Sbjct: 91 H 91
>Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical
protein F01D4.7 protein.
Length = 341
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 47 KLEIMFVFPVINVMNSALFIARXIIYNHNK 136
KL I ++F INV+N + +Y HNK
Sbjct: 187 KLRINYIFITINVLNVLTLMHSIGLYRHNK 216
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 111 LAINKAEFITFMTGKTNIISNFTSNRPMSWLTSS 10
L I +A+F F G II F ++ WLTSS
Sbjct: 648 LCIWEAQFGDFFNGAQIIIDTFLASAESKWLTSS 681
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 111 LAINKAEFITFMTGKTNIISNFTSNRPMSWLTSS 10
L I +A+F F G II F ++ WLTSS
Sbjct: 648 LCIWEAQFGDFFNGAQIIIDTFLASAESKWLTSS 681
>U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical
protein W01C8.5b protein.
Length = 323
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 62 FVFPVINVMNSALFIARXIIYNHNKHGGTISRVVTEL 172
+V+ V +VM+ L++ R + YN N GG +++ EL
Sbjct: 136 YVWHVNSVMSPDLYLMRNVTYNFNVEGGR-EKMIPEL 171
>U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical
protein W01C8.5a protein.
Length = 511
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 62 FVFPVINVMNSALFIARXIIYNHNKHGGTISRVVTEL 172
+V+ V +VM+ L++ R + YN N GG +++ EL
Sbjct: 324 YVWHVNSVMSPDLYLMRNVTYNFNVEGGR-EKMIPEL 359
>AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein.
Length = 511
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 62 FVFPVINVMNSALFIARXIIYNHNKHGGTISRVVTEL 172
+V+ V +VM+ L++ R + YN N GG +++ EL
Sbjct: 324 YVWHVNSVMSPDLYLMRNVTYNFNVEGGR-EKMIPEL 359
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 144 VQYLVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLXAGXYDV 281
++ L+ LLSL + D++ + +A KC EE+ + G Y V
Sbjct: 1 MRLLIALLSLATYA-DSLYFHIAETEKKCFIEEIPDETMVTGNYKV 45
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 144 VQYLVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLXAGXYDV 281
++ L+ LLSL + D++ + +A KC EE+ + G Y V
Sbjct: 1 MRLLIALLSLATYA-DSLYFHIAETEKKCFIEEIPDETMVTGNYKV 45
>U41011-2|AAM98042.1| 163|Caenorhabditis elegans Hypothetical
protein D2024.5b protein.
Length = 163
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 280 TSYXPAXNTLACNSSFKHLCVFGAKLHIIASV 185
TS+ P+ +T A + +F L VFG +IA +
Sbjct: 42 TSFPPSDHTTATSIAFISLVVFGVACALIAKI 73
>U41011-1|AAA82285.2| 166|Caenorhabditis elegans Hypothetical
protein D2024.5a protein.
Length = 166
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 280 TSYXPAXNTLACNSSFKHLCVFGAKLHIIASV 185
TS+ P+ +T A + +F L VFG +IA +
Sbjct: 42 TSFPPSDHTTATSIAFISLVVFGVACALIAKI 73
>AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical
protein D1065.1 protein.
Length = 585
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 23 QLIGLFDVKLEIMFVFPVINVMNSALFIARXIIYNHNKHGGTISRVVTELNLA 181
QLIG DV + ++ +F + ALF R + Y + HG I ++ + LA
Sbjct: 384 QLIGYTDVLMFVILLFACL----LALFQMRKLQYTSHVHGEVIDDILLIVGLA 432
>AC199172-2|ABO33275.1| 305|Caenorhabditis elegans F-box a protein
protein 32 protein.
Length = 305
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 283 QKYRAQRVDYIIKDSKGHILSXKDTVTKGKFSF 381
+KYR V Y + K + +TVT KFSF
Sbjct: 120 EKYRHNTVSYFVDVLKEDVNIHVETVTLNKFSF 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,372,601
Number of Sequences: 27780
Number of extensions: 178933
Number of successful extensions: 405
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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