Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M19
(626 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 320 1e-86
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 319 3e-86
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 209 1e-78
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 283 3e-75
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 250 2e-65
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 235 8e-61
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 132 1e-60
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 233 3e-60
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 225 5e-58
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 204 1e-51
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 198 7e-50
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 159 4e-38
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 119 7e-26
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 115 8e-25
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 113 3e-24
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 111 1e-23
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 109 7e-23
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 108 9e-23
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 101 1e-20
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 100 2e-20
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 99 8e-20
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 98 1e-19
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 95 1e-18
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 93 5e-18
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 93 7e-18
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 90 3e-17
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 87 2e-16
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 87 2e-16
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 84 2e-15
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 77 5e-13
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 74 3e-12
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 72 1e-11
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 72 1e-11
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 43 0.007
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.20
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 38 0.20
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 35 1.4
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 1.4
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 3.2
UniRef50_UPI000058722D Cluster: PREDICTED: similar to Ehf protei... 33 5.6
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 33 5.6
UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1; ... 33 7.4
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 33 7.4
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
UniRef50_A0A7M3 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 320 bits (787), Expect = 1e-86
Identities = 148/193 (76%), Positives = 164/193 (84%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFL NRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++ KT E FRL+YDVKGRF IHRI+ EEA
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
YKLCKVK+ G VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+ GNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180
Query: 577 CMITGRP*LGARG 615
CMITG LG G
Sbjct: 181 CMITGGRNLGRVG 193
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 319 bits (784), Expect = 3e-86
Identities = 146/193 (75%), Positives = 163/193 (84%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
V KI QR IK+DGKVRTD TYPAGFMDV+SI KT E FRLIYD KGRF +HRITPEEA
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
YKLCKV+++ G +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF+ GNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
Query: 577 CMITGRP*LGARG 615
CM+TG LG G
Sbjct: 181 CMVTGGANLGRIG 193
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 209 bits (511), Expect(2) = 1e-78
Identities = 97/118 (82%), Positives = 104/118 (88%)
Frame = +1
Query: 40 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEV 219
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFL NRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 220 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEA 393
KI QR IK+DGKVRTD TYP GFMDV+SI KT E FRLIYDVKGRFT+HRIT EEA
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEA 119
Score = 106 bits (255), Expect(2) = 1e-78
Identities = 45/73 (61%), Positives = 57/73 (78%)
Frame = +1
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
YKLCKVK++ G +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF+ N+
Sbjct: 153 YKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSNM 212
Query: 577 CMITGRP*LGARG 615
CM+TG LG G
Sbjct: 213 CMVTGGANLGRIG 225
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 283 bits (693), Expect = 3e-75
Identities = 129/185 (69%), Positives = 152/185 (82%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ + NRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEA
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
+KLCKV+ + G +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180
Query: 577 CMITG 591
M+TG
Sbjct: 181 VMVTG 185
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 250 bits (613), Expect = 2e-65
Identities = 111/193 (57%), Positives = 144/193 (74%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ L NRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
V IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+A
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAK 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
+KLCK+++ G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN
Sbjct: 121 FKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNT 180
Query: 577 CMITGRP*LGARG 615
M+ G +G G
Sbjct: 181 AMMIGGNGMGRVG 193
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 235 bits (574), Expect = 8e-61
Identities = 113/188 (60%), Positives = 140/188 (74%)
Frame = +1
Query: 28 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALT 207
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFL NRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALT 67
Query: 208 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPE 387
G+EV KI Q IKVDGK+RTD P MDV+SI K E F LIY + RF +HRITPE
Sbjct: 68 GDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPE 127
Query: 388 EAXYKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEX 567
E YKLCK++++ +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF+
Sbjct: 128 EVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDT 186
Query: 568 GNLCMITG 591
GNLC++TG
Sbjct: 187 GNLCLVTG 194
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 132 bits (320), Expect(2) = 1e-60
Identities = 58/90 (64%), Positives = 70/90 (77%)
Frame = +1
Query: 346 DVKGRFTIHRITPEEAXYKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 525
D KGRF +HRITPEEA YKL KV+++ G +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 526 IATTKIMDFIKFEXGNLCMITGRP*LGARG 615
+ T KI DF KF+ GNLCM+TG LG G
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIG 165
Score = 123 bits (297), Expect(2) = 1e-60
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFL NRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 217 VLKIVKQRLIKVDGK 261
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 233 bits (570), Expect = 3e-60
Identities = 105/183 (57%), Positives = 138/183 (75%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI + N+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
L I+K+ I VDGKVR D +PAG MDV+SI T E +R++YD G F +HRIT +E+
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESM 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
+KLCKV RV+ G +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+L
Sbjct: 121 FKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSL 180
Query: 577 CMI 585
C++
Sbjct: 181 CVV 183
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 225 bits (551), Expect = 5e-58
Identities = 105/205 (51%), Positives = 145/205 (70%)
Frame = +1
Query: 1 RAFFFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFL 180
++F +S+ +L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFL
Sbjct: 5 KSFSWSVLFL--MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFL 62
Query: 181 XNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGR 360
+RLKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGR
Sbjct: 63 RDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGR 122
Query: 361 FTIHRITPEEAXYKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 540
F +H I +EA +KL +V + G +P++VTHDGRTI Y DP ++V+D+++ +I T +
Sbjct: 123 FCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGE 182
Query: 541 IMDFIKFEXGNLCMITGRP*LGARG 615
+ IKF+ G++ M+T +G G
Sbjct: 183 VESVIKFKVGDVAMVTAGGNVGRVG 207
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 204 bits (498), Expect = 1e-51
Identities = 98/180 (54%), Positives = 118/180 (65%)
Frame = +1
Query: 52 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIV 231
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ + NRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 232 KQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCK 411
+Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA KL K
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 412 VKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITG 591
V + T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TG
Sbjct: 123 VVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTG 182
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 198 bits (484), Expect = 7e-50
Identities = 108/223 (48%), Positives = 137/223 (61%), Gaps = 31/223 (13%)
Frame = +1
Query: 10 FFSI*YLSNMARGPKKHLKRLNAPKAWMLD-------------------------KLGGV 114
FFS + ARGPKKHLKR+NAPK+WML+ KL +
Sbjct: 74 FFSF-EIYKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFI 132
Query: 115 Y----APRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDP 276
Y A RPS GPHKLRE LPL + L RL YAL G +V I+ K++ + VDGKVR D
Sbjct: 133 YFKKQATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDK 192
Query: 277 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVKRVATGPNNVPYLV 456
YP G MDVV I KT++ FR++YD KGRF + ++ EEA YKL KV A GPN +PY+V
Sbjct: 193 GYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIV 252
Query: 457 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMI 585
THD RTIR+P+P IK+ D+++ D+ KI +F E GN+C I
Sbjct: 253 THDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYI 295
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 159 bits (387), Expect = 4e-38
Identities = 76/173 (43%), Positives = 114/173 (65%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
+ I+ ++ IKV+G+VRT+ +P G DVVSI KT E FR++Y+V +F +HRI+ EEA
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEAS 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 555
Y+L KV + +PY+V+ G +IR+ DP I + +I++ T+K++++I
Sbjct: 121 YRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 119 bits (286), Expect = 7e-26
Identities = 72/199 (36%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Frame = +1
Query: 46 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVL 222
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I + + L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 223 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYK 402
KI+ + I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 403 LCKVKRVATGPNNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTK 540
+C++K + HDG+ + DP + V DS+ L++ + K
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWK 186
Query: 541 IMDFIKFEXGN-LCMITGR 594
++D I FE G + +TGR
Sbjct: 187 VVDHIPFEEGVWVYAMTGR 205
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 115 bits (277), Expect = 8e-25
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Frame = +1
Query: 43 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVL 222
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ + + LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 223 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYK 402
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 403 LCKV--KRVATGPNNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDF 552
LCK+ K V G N L HDGR + + + K DS+ + I I
Sbjct: 122 LCKIVNKTVVKGGN--IQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGH 179
Query: 553 IKFEXGNLCMITG 591
+ F G L ITG
Sbjct: 180 VAFGEGKLAYITG 192
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 113 bits (272), Expect = 3e-24
Identities = 61/190 (32%), Positives = 95/190 (50%)
Frame = +1
Query: 46 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLK 225
G +KHLK APK W + + +PS G H + L L + + + LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 226 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKL 405
I+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KL
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 406 CKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMI 585
CK+ +T + HDG+ + + V D I L + +I + + + G +I
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLI 182
Query: 586 TGRP*LGARG 615
TG G G
Sbjct: 183 TGGKHTGELG 192
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 111 bits (267), Expect = 1e-23
Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 8/204 (3%)
Frame = +1
Query: 28 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALT 207
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I L + YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 208 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPE 387
E +I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PE
Sbjct: 61 MKEARRILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPE 120
Query: 388 EAXYKLCKVKRVATGPNNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKI 543
EA YKL +++R T N HDGR + Y + K D++ + I I
Sbjct: 121 EAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSI 180
Query: 544 MDFIKFEXGNLCMITGRP*LGARG 615
+ + FE G L ++ +G G
Sbjct: 181 VSHVPFEVGTLAIVVDGRNVGFMG 204
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 109 bits (261), Expect = 7e-23
Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 10/203 (4%)
Frame = +1
Query: 37 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGN 213
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ + N L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 214 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLI-YDVKGRFTIHRITPEE 390
E K++ + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEE 119
Query: 391 AXYKLCKVKRVATGPNNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIM 546
K +++ T L HDGR I R DP + + D++ + + +I
Sbjct: 120 GDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIK 179
Query: 547 DFIKFEXGNLCMITGRP*LGARG 615
IKF G + +I G +G G
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVG 202
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 108 bits (260), Expect = 9e-23
Identities = 68/183 (37%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Frame = +1
Query: 58 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVK 234
HL+R AP W + K GGV+ RPS GPH L LPL + + + LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 235 QRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKV 414
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 415 KRVATGPNNVPYLVTHDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXG-NLCM 582
+ L HDGR T IK DS+ D+ I I + G N +
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVV 182
Query: 583 ITG 591
I G
Sbjct: 183 IHG 185
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 101 bits (243), Expect = 1e-20
Identities = 56/190 (29%), Positives = 95/190 (50%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
MA+G KKH KR+++ K G++ + S+GPH + + L+ + A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
K+VK + V+GK +P MD +S N+ +R++ G+ T++ I E
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKD 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
K+CKV ++ + ++T D R ++ IKV DS+ + +I+ +KFE G+L
Sbjct: 121 LKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSL 180
Query: 577 CMITGRP*LG 606
C+IT LG
Sbjct: 181 CLITRGKHLG 190
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 100 bits (240), Expect = 2e-20
Identities = 57/186 (30%), Positives = 89/186 (47%)
Frame = +1
Query: 58 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQ 237
H KRL+ PK+W + + G + GPH LPL + + + LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 238 RLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVK 417
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 418 RVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITGRP 597
T L +DG I + DS+ L I ++ +KFE GNL M+ G
Sbjct: 122 NKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ 180
Query: 598 *LGARG 615
G G
Sbjct: 181 HSGETG 186
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 99.1 bits (236), Expect = 8e-20
Identities = 50/140 (35%), Positives = 73/140 (52%)
Frame = +1
Query: 58 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQ 237
HL+R +P+ W +++ G ++ +PS GPH +PL + L + YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 238 RLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVK 417
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 418 RVATGPNNVPYLVTHDGRTI 477
L HDGR I
Sbjct: 123 DKTMVKAGKIQLNLHDGRNI 142
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 98.3 bits (234), Expect = 1e-19
Identities = 56/177 (31%), Positives = 87/177 (49%)
Frame = +1
Query: 58 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQ 237
HLKR+ AP+ W + + + +P G H +PLV+ L + LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 238 RLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVK 417
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 418 RVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMIT 588
L HDG T+ + K DS+ L + KI + G+L M+T
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVT 178
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 95.1 bits (226), Expect = 1e-18
Identities = 56/175 (32%), Positives = 85/175 (48%)
Frame = +1
Query: 64 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRL 243
KRL + + + + P P+ G H + + L+ + + LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 244 IKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVKRV 423
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 424 ATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMIT 588
P N L THDGRT D KV D + + KI + IK + GN IT
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYIT 178
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 93.1 bits (221), Expect = 5e-18
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%)
Frame = +1
Query: 58 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQ 237
H+KRL P++W L + ++ +P+ G H C+PL + L + L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 238 RLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVK 417
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 418 RVATGPNNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITGR 594
+T + + HDGR I D L D++ + + + F G +TG
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGG 182
Query: 595 P*LG 606
+G
Sbjct: 183 SHIG 186
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 92.7 bits (220), Expect = 7e-18
Identities = 51/178 (28%), Positives = 86/178 (48%)
Frame = +1
Query: 58 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQ 237
H KR++ PK+W + K + GPH + +PL + L + L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 238 RLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVK 417
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 418 RVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITG 591
+ + +DG I DSI L + K++ IK+E GNL MI G
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVG 179
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 90.2 bits (214), Expect = 3e-17
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Frame = +1
Query: 52 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKI 228
K+HL+ L P+ W + K G + +PS GPH +P+ ++L + L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 229 VKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLC 408
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYG 125
Query: 409 K-VKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 564
K +++V+ + Y +T DGRT D K + + +I KI + I E
Sbjct: 126 KIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLE 176
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 87.4 bits (207), Expect = 2e-16
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 1/177 (0%)
Frame = +1
Query: 64 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRL 243
K + A + + + ++ P+ H + +P++I L + LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 244 IKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCK-VKR 420
+KVDG++ D +P GFMDV+SI + ++YD KG+ I + P KL K VK+
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 421 VATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITG 591
G + L HDG+TI I +D + + I +I + +K G+ ITG
Sbjct: 127 TIIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITG 182
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 87.4 bits (207), Expect = 2e-16
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 5/184 (2%)
Frame = +1
Query: 55 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVK 234
K+LKRL AP +W + K + + + GPH LP+ ++L + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 235 QRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKV 414
QR + V+G+ D G D+VSI K + +R+ DVKG I E A +LCK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 415 KRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT-----KIMDFIKFEXGNLC 579
+ T L G + D K DS+ + + T +I+D + GN+
Sbjct: 122 RNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVA 180
Query: 580 MITG 591
MI G
Sbjct: 181 MIVG 184
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 84.2 bits (199), Expect = 2e-15
Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 5/191 (2%)
Frame = +1
Query: 58 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQ 237
H+ R AP + K + R GPHK++E +PL I L LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 238 RLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVK 417
+ VDGKVR D YP G MDVV I + R+I D T I+ E+A YK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 418 RVATGPNNVPYLVTHDGRTIRYP-DPLIKVN----DSIQLDIATTKIMDFIKFEXGNLCM 582
T + V L DGR I + L + N ++++++ KI + G M
Sbjct: 123 NKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAM 182
Query: 583 ITGRP*LGARG 615
I G G G
Sbjct: 183 IIGGRNAGLHG 193
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 76.6 bits (180), Expect = 5e-13
Identities = 54/176 (30%), Positives = 81/176 (46%)
Frame = +1
Query: 64 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRL 243
K + AP+ + + +A G HK +PL+I L + LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 244 IKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVKRV 423
+ VDGKV + GFMD +++ + L + YD KG+ I E KL +VK
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 424 ATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITG 591
+ HDG T+ IK DS+ + I +I+D +KF GN ITG
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITG 179
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 73.7 bits (173), Expect = 3e-12
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 3/179 (1%)
Frame = +1
Query: 64 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRL 243
KR+ AP AW + + Y S+GPH LP+ I+L + +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 244 IKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVKRV 423
+ ++G + TD D++S K ++ + ++ D KGR + I+ + A +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 424 ATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFEXGNLCMITG 591
T + G + K DS+ + IA + + GN+ +I G
Sbjct: 124 TTIKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIG 181
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 72.1 bits (169), Expect = 1e-11
Identities = 48/187 (25%), Positives = 79/187 (42%)
Frame = +1
Query: 55 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVK 234
K LKR AP W + + G + G H +P + L + L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 235 QRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKV 414
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 415 KRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITGR 594
+ + HDGR++ D + V DS + + KI+ + E G ++T
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRG 186
Query: 595 P*LGARG 615
G+ G
Sbjct: 187 TNAGSTG 193
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 72.1 bits (169), Expect = 1e-11
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 1/174 (0%)
Frame = +1
Query: 58 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQ 237
H KRL+ P +W +++ + + GPH +PL+I L + L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 238 RLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVK 417
+ ++GK +D P G D+++ + E +R+ GR + I P+ A KL K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 418 RVATGPNNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
L HDG T I D DSI + +++ ++E G L
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGAL 176
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 42.7 bits (96), Expect = 0.007
Identities = 26/96 (27%), Positives = 49/96 (51%)
Frame = -3
Query: 585 DHTQVPXLKLDEVHNLXSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNIVRSGRHTLDFT 406
DH Q ++LD + +L +V +G+ D + + +GAA+++ R+ +
Sbjct: 98 DHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLA 157
Query: 405 QLVXSLLRGDTVDCESALNIID*TKQFISLXN*DNI 298
QLV D V ES+L ++D + FI+L + D++
Sbjct: 158 QLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.9 bits (84), Expect = 0.20
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -3
Query: 330 QFISLXN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIXQENHQGQALA 151
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 150 QLV 142
Q +
Sbjct: 110 QFI 112
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 37.9 bits (84), Expect = 0.20
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 130 STGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 309
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 310 IXKTNELFRLIYDVKG 357
I +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 35.1 bits (77), Expect = 1.4
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 451 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCMITGR 594
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++ R
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIVVSR 754
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 1.4
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 169 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 23
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 3.2
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 88 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDGKVR 267
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 268 TDPT-YPAGFMDVVSIXKTNELFRLIYDVKG 357
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_UPI000058722D Cluster: PREDICTED: similar to Ehf protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Ehf protein - Strongylocentrotus purpuratus
Length = 510
Score = 33.1 bits (72), Expect = 5.6
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -3
Query: 417 LDFTQLVXSLLRGDTVDCESALNIID*TKQFISLXN*DNIHKSS---RISRVSPNFPINL 247
+D T L+ LL G+ D S + + L D +HKS +++ SPN PINL
Sbjct: 110 MDLTMLMEDLLHGNMTDHFSHQLCDNQYHSNVGLGGNDGLHKSDFLDNLTQFSPNSPINL 169
Query: 246 YEALF 232
++F
Sbjct: 170 STSMF 174
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 33.1 bits (72), Expect = 5.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 277 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYKLCKVKRV 423
+YPA + D I + E+FRL+ + + RI + K C ++RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
>UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1926
Score = 32.7 bits (71), Expect = 7.4
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 402 LVXSLLRGDTVDCESALNIID*TKQFISLXN*DNIHKSSRISRVSPNFPI 253
+V + D +D + LNI D T+QFIS D K + +S ++ NF I
Sbjct: 295 IVYKMRNKDQIDIVTDLNITDQTQQFISFNISDYSFKQTSVSILNSNFTI 344
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 32.7 bits (71), Expect = 7.4
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -3
Query: 528 NV*LDGIVDFDKWVWIADGAAIMRYQVRNIVRSGRHTLDFTQLVXSLLRGDTVDCESALN 349
NV + I + +WV G RY+ R R+ H + + +LL D VDCE+ LN
Sbjct: 400 NVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLN 458
Query: 348 I 346
I
Sbjct: 459 I 459
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 32.3 bits (70), Expect = 9.8
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 224 FRTSFPVKAYFRRFXRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 54
F F KA FR+ RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 53 LGPRAML 33
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_A0A7M3 Cluster: Putative uncharacterized protein; n=1;
Cyanophage Ma-LMM01|Rep: Putative uncharacterized
protein - Cyanophage Ma-LMM01
Length = 840
Score = 32.3 bits (70), Expect = 9.8
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 385 EEAXYKLCKVKRVATGPNNVP---YLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 546
EE Y++ + TG NV Y + +DGR+I +P+P++ + L I+ +I+
Sbjct: 66 EEGWYRINPAQLTITGNTNVTLRIYRIDYDGRSILFPEPVVGQDGYPFLQISGNQIL 122
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,552,000
Number of Sequences: 1657284
Number of extensions: 12665921
Number of successful extensions: 32800
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 31771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32779
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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