Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M19
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 291 5e-80
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 291 5e-80
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 289 2e-79
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 5.1
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 5.1
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 291 bits (714), Expect = 5e-80
Identities = 133/193 (68%), Positives = 153/193 (79%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FL NRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
V I+ QRLIKVDGKVRTD T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEA
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
YKLCKVKRV G VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF+
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 577 CMITGRP*LGARG 615
M+TG +G G
Sbjct: 181 VMVTGGRNMGRVG 193
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 593 GRNLGRVGTIV 625
GRN+GRVGTIV
Sbjct: 186 GRNMGRVGTIV 196
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 291 bits (714), Expect = 5e-80
Identities = 133/193 (68%), Positives = 153/193 (79%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FL NRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
V I+ QRLIKVDGKVRTD T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEA
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
YKLCKVKRV G VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF+
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 577 CMITGRP*LGARG 615
M+TG +G G
Sbjct: 181 VMVTGGRNMGRVG 193
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 593 GRNLGRVGTIV 625
GRN+GRVGTIV
Sbjct: 186 GRNMGRVGTIV 196
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 289 bits (710), Expect = 2e-79
Identities = 132/193 (68%), Positives = 153/193 (79%)
Frame = +1
Query: 37 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNE 216
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FL NRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 217 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAX 396
V I+ QRLI+VDGKVRTD T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEA
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 397 YKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNL 576
YKLCKVKRV G VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF+
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 577 CMITGRP*LGARG 615
M+TG +G G
Sbjct: 181 VMVTGGRNMGRVG 193
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 593 GRNLGRVGTIV 625
GRN+GRVGTIV
Sbjct: 186 GRNMGRVGTIV 196
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 470 RPSCVTKYGTLLGPVATRLTLHNLXLASSGVIRWIVN 360
+P C Y TL+G L HN L SG+ WI N
Sbjct: 81 KPPC--SYATLIGLAI--LQSHNKQLTLSGIYTWIRN 113
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 411 FTQLVX-SLLRGDTVDCESALNIID*TKQ 328
F L+ S RGDT D +ALNI + TK+
Sbjct: 891 FAHLINNSTRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,978
Number of Sequences: 5004
Number of extensions: 51678
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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