Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M19
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   254   5e-68
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   4.8  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    28   6.3  
AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  254 bits (621), Expect = 5e-68
 Identities = 120/191 (62%), Positives = 142/191 (74%)
 Frame = +1

Query: 43  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVL 222
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FL NRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 223 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAXYK 402
           KI+ QR+++VDGKVRT   +P GFMDVV+I +TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 403 LCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFEXGNLCM 582
           LCKVK V T    VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 583 ITGRP*LGARG 615
           +TG   +G  G
Sbjct: 182 VTGGRNVGRVG 192


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 493 VGLDSGWCGHHALPSTEHC*VRSP 422
           VGL S W  H A+P  + C  RSP
Sbjct: 652 VGLRSDWFEHQAMPVVDMCTERSP 675


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +1

Query: 355 GRFTIHRITPEEAXYKLCKVKRVATGPNNVP-----YLVTHDGRTIR-YP 486
           G+  + R+T  E  Y+ CK+++ A     VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 421 VATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 549
           ++TG +N+P   +HD + +   D L K +    + +++ + MD
Sbjct: 20  LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62


>AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical
           protein Y50D4B.1 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 248 FMRRCFTIFRTSFPVKAYFRRFXRKITRGKH 156
           FMRRC T F   +PV A  +R   +I R K+
Sbjct: 155 FMRRCLTRFPVHYPVPA--KRIPMEINRQKN 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,582
Number of Sequences: 27780
Number of extensions: 297054
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)