Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M19
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.20 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 393 SLLRGDTVDCESALNIID*TKQFISLXN*DNIHKSSRIS 277
           SLL+ +TV C+ A++++      + + + DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 435 RSGRHTLDFTQLVXSLLRGDTVDCESALNIID*TKQFISL 316
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 187 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 288
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 507 RFHPVRHCNYXDYGLHQV*VRELVYDHXKAVTWGAWAPSC 626
           R HP R+    + G+ +V     + +  K    G W  SC
Sbjct: 350 REHPSRNFTMSEDGMIEVIPLSAIPEPSKNPAMGHWQMSC 389


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 197 YFRRFXRKITRGKHSRNLWGPVDGLGAYTPPSLS 96
           Y R   R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 75  RSQSMDVGQTWRCVCTETVNRSPQVARVL 161
           +S++ DV ++WR +  E  NR+    R++
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMI 289


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 46  GPKKHLKRLNAP 81
           GPK+HL+ L  P
Sbjct: 336 GPKEHLRSLGIP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,991
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)