Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M16
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    44   3e-05
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          39   7e-04
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    34   0.015
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    33   0.035
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    28   1.0  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.3  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    26   4.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   9.4  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   9.4  

>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 126 CGLCEEQKSKYCCPKCGILYCSLGCYK 206
           C +C E + KY CPKC   YCSL C+K
Sbjct: 4   CSICNESEIKYKCPKCSFPYCSLPCWK 30


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 99  ITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHL-XCS 230
           ++EN    IC  C++  SKY CP+C   +C L C    K L  CS
Sbjct: 1   MSENRLG-ICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCS 44


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 72  IMDETDTTKITENTFAKICGLCEEQKSK-YCCPKCGIL-YCSLGCYKSD 212
           I    D   +      + C  C E+K K   C  C I+ YCS GC K+D
Sbjct: 31  IRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKAD 79


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 120 KICGLCEEQKSKYCCPKCGILYCSLGC 200
           K C +C     KY C  CG  YCS GC
Sbjct: 100 KFCNVCGYW-GKYACQNCGTSYCSKGC 125


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 474 EKNEFEALISQXDVGSILPQWEPWWTKRTKSKLXTXVCDDEL 599
           E N F A     +V ++LP+W+   TK  K ++   + D EL
Sbjct: 753 EANLFAATYCPDEVKNVLPEWKVDLTKNQKERIADSLGDLEL 794


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 201  YKSDKHLXCSENFYRDWVNEELSS--QNVDEESKRKMIEILKK 323
            Y SDK   C EN+ R+   EE+++  + +    KR M+ + K+
Sbjct: 982  YASDKRKFCKENYLREKALEEVTNLRKQIIGLLKRYMVRVEKE 1024


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 104 CDLRCICFVHYSSSGTDYHCITIFRRL 24
           CD++    V+   SGTD+ CI  F  L
Sbjct: 4   CDVQMYMPVNVVQSGTDFECIVKFTNL 30


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 33  KYSDTVVISTTRRIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCG 176
           ++  T +IS  + +  +T   K+ +  F K+C +     S Y C  CG
Sbjct: 48  EHETTPIIS--QNLYLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCG 93


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 198 CYKSDKHLXCSENFYRDWV 254
           C K D ++ C E+F+RD V
Sbjct: 85  CDKLDDYVLCKEDFHRDLV 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,544
Number of Sequences: 5004
Number of extensions: 37058
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)