Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M16
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.48 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.48 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.8  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 53  NQYHSKNNGRNRYNEDHRKYF 115
           N Y++ NN  N YN +++K +
Sbjct: 332 NNYNNYNNYNNNYNNNYKKLY 352



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 44  YSGNQYHSKNNGRNRYNEDHRKY 112
           Y  + Y++ NN  N YN  +  Y
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNY 344


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  YSGNQYHSKNNGRNRYNED 100
           Y+ N ++SK+NG N  N D
Sbjct: 138 YNDNYFYSKSNGSNSSNSD 156


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 44  YSGNQYHSKNNGRNRYNEDHRKYF 115
           Y+ N Y++ N   N YN   + Y+
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLYY 119


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  YSGNQYHSKNNGRNRYNEDHRKYF 115
           Y+ N Y++ NN  N YN + +K +
Sbjct: 333 YNNNNYNN-NNYNNNYNNNCKKLY 355


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 44  YSGNQYHSKNNGRNRYNEDHRKYF 115
           Y+    +  NN  N YN +++K +
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 44  YSGNQYHSKNNGRNRYNEDHRKYF 115
           Y+    +  NN  N YN +++K +
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 44  YSGNQYHSKNNGRNRYNE 97
           Y+ + Y++ NN  N YN+
Sbjct: 89  YNYSNYNNYNNNYNNYNK 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,377
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)