Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M15
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical pr...    35   0.057
Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinas...    28   6.6  
AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical ...    27   8.7  
AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical
           protein F13H8.4 protein.
          Length = 275

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 24/129 (18%), Positives = 45/129 (34%)
 Frame = +2

Query: 236 WIEALQMIFIVGSAXXXXXXXXXXXXXXXXXXXXRQKVYRAWRARVGGRISCAVFMIITY 415
           W++ +Q+ FIV +                     R+ +Y+   AR GG+ +C + M+I +
Sbjct: 24  WLDKVQVFFIVIAVLMGLFSLFFLCIGFTATGGTRETMYKDDEARCGGKFACVIAMLIDF 83

Query: 416 XXXXXXXXXXXXXXXXXXXXXXXXKLCSKPENIVSSTCIDFTQFDFMFPSTVKQEXMKIC 595
                                   +LC          CID   F +   S+     +++C
Sbjct: 84  FLIIAWLFIISIVSWLCIFYYFFDRLCMNLPGYTDGDCIDLHVF-WPLVSSFANSNLRMC 142

Query: 596 EPHKIKLFC 622
               ++ FC
Sbjct: 143 -GGDVQQFC 150


>Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical
           protein W08D2.3b protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +2

Query: 92  ACLTRVPHATLIATIMCCLGVGVFCGTMYRGSALSILMFDEVFHFRLIWIEALQMIFIVG 271
           AC   +PHA  I  ++C + + VF GT+  G +LS ++ + V  F+      LQ + ++G
Sbjct: 108 ACFLALPHAAHIILLLCIVFI-VF-GTVL-GISLSAVISNFVVIFKQQSFLLLQFLHLIG 164

Query: 272 S 274
           +
Sbjct: 165 A 165


>Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical
           protein W08D2.3a protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +2

Query: 92  ACLTRVPHATLIATIMCCLGVGVFCGTMYRGSALSILMFDEVFHFRLIWIEALQMIFIVG 271
           AC   +PHA  I  ++C + + VF GT+  G +LS ++ + V  F+      LQ + ++G
Sbjct: 111 ACFLALPHAAHIILLLCIVFI-VF-GTVL-GISLSAVISNFVVIFKQQSFLLLQFLHLIG 167

Query: 272 S 274
           +
Sbjct: 168 A 168


>Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical
           protein B0285.9 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 515 VSSTCIDFTQFDFMFPSTVKQEXMKICEPHKIKLFCKDYVE 637
           +S T ID+      FP  +K     I  P  I++FC+ YVE
Sbjct: 251 LSETAIDYR---VPFPPGIKMNGDLIDNPPNIQIFCEAYVE 288


>AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinase
           CKB-2 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 515 VSSTCIDFTQFDFMFPSTVKQEXMKICEPHKIKLFCKDYVE 637
           +S T ID+      FP  +K     I  P  I++FC+ YVE
Sbjct: 251 LSETAIDYR---VPFPPGIKMNGDLIDNPPNIQIFCEAYVE 288


>AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical
           protein 4R79.1b protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 504 GFEHNFQNIVN-KNVVITRNXSNTIQTKVKIYVMIIKTAHDILP 376
           G  +++++I++  +   +RN  NTI+T    +  +I TA D+ P
Sbjct: 46  GENYDYKSIMHYDSTAFSRNGRNTIETVENGFTQVIGTAMDLSP 89


>AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical
           protein 4R79.1a protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 504 GFEHNFQNIVN-KNVVITRNXSNTIQTKVKIYVMIIKTAHDILP 376
           G  +++++I++  +   +RN  NTI+T    +  +I TA D+ P
Sbjct: 210 GENYDYKSIMHYDSTAFSRNGRNTIETVENGFTQVIGTAMDLSP 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,784
Number of Sequences: 27780
Number of extensions: 357159
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)