Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M14
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    31   0.091
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   4.5  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   6.0  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   7.9  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   7.9  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 214 SVKIYEDDEKSSFTEGNIFNGFLNVEIXRNAMEATLAVCLVFFVLWMLFSWL 369
           ++KIY   +K    +G IF     +E+ R+A  A   VC     LW+L + L
Sbjct: 671 ALKIYPHYDKLYMMKGQIFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKL 722


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 389 LKSPTSSSQEKSIHSTKKTRQTARVASIAFLLISTLRKPLKMFPSVKELFSSSSYIFT 216
           LKS  S+++  S+H  + T   +  +S + ++ S   KP    P   +LF  +S  FT
Sbjct: 166 LKSQQSNTRSNSVHEKQNTDHASNASSSSSVVSSPSLKPNNTSP--LKLFQGASDPFT 221


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 392 FLKSPTSSSQEKSIHSTK 339
           F KSP +SSQE +IHS++
Sbjct: 407 FPKSPLNSSQEVTIHSSQ 424


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 319 LAVCLVFFVLWMLFSWL-LLVGLF 387
           L +C ++F +W  F+ L L+VG+F
Sbjct: 68  LCICWLYFFIWYPFALLALMVGVF 91


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 307 MEATLAVCLVFFVLWMLFSW 366
           M+A +AV LV  +LW  +SW
Sbjct: 231 MKANVAVGLVQNILWYYYSW 250


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 349 WMLFSWLLLVGLFK 390
           W +F+WL LVG+F+
Sbjct: 277 WTIFAWLGLVGVFQ 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,310
Number of Sequences: 5004
Number of extensions: 37679
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)