Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M14
(575 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17730-1|AAA28856.1| 378|Drosophila melanogaster protein ( D.me... 30 2.0
AE014296-2812|AAF49400.1| 378|Drosophila melanogaster CG9668-PA... 30 2.0
AE014296-1827|AAF50151.1| 196|Drosophila melanogaster CG14151-P... 29 3.4
AY071260-1|AAL48882.1| 236|Drosophila melanogaster RE29825p pro... 29 6.0
AE014296-2985|AAF49286.1| 236|Drosophila melanogaster CG5492-PB... 29 6.0
AE014296-2984|AAN11686.1| 236|Drosophila melanogaster CG5492-PA... 29 6.0
Y00043-1|CAA68259.1| 383|Drosophila melanogaster protein ( Dros... 28 7.9
M17718-1|AAA28854.1| 383|Drosophila melanogaster protein ( D.me... 28 7.9
AF184224-1|AAD55735.1| 383|Drosophila melanogaster Rh3 protein. 28 7.9
AE014297-2763|AAG22157.1| 383|Drosophila melanogaster CG10888-P... 28 7.9
>M17730-1|AAA28856.1| 378|Drosophila melanogaster protein (
D.melanogaster opsinRh4 gene, exon 2. ).
Length = 378
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 310 EATLAVCLVFFVLWMLFSWLLLVGLFKNKPCL 405
+A + +C +FFV W + + L+G F +K L
Sbjct: 280 KAAITICFLFFVSWTPYGVMSLIGAFGDKSLL 311
>AE014296-2812|AAF49400.1| 378|Drosophila melanogaster CG9668-PA
protein.
Length = 378
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 310 EATLAVCLVFFVLWMLFSWLLLVGLFKNKPCL 405
+A + +C +FFV W + + L+G F +K L
Sbjct: 280 KAAITICFLFFVSWTPYGVMSLIGAFGDKSLL 311
>AE014296-1827|AAF50151.1| 196|Drosophila melanogaster CG14151-PA
protein.
Length = 196
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 316 TLAVCLVFFVLWMLFSWLLLVGLFKNKPCLVLSYLSY 426
T V L+F + WM+ +L+ G+++ K LV +L +
Sbjct: 42 TALVALIFTIFWMVIIIVLMAGIYRRKLGLVRFWLVF 78
>AY071260-1|AAL48882.1| 236|Drosophila melanogaster RE29825p
protein.
Length = 236
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 277 FLNVEIXRNAMEATLAVCLVFFVLWMLFSWLLLVGLFKNKPCLVLSY 417
F+N + N + V LV ++ L S+L VG K CL+L+Y
Sbjct: 45 FVNELLGTNLFSGAVYVLLVTSIIICLVSFLGCVGAGKEVKCLLLTY 91
>AE014296-2985|AAF49286.1| 236|Drosophila melanogaster CG5492-PB,
isoform B protein.
Length = 236
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 277 FLNVEIXRNAMEATLAVCLVFFVLWMLFSWLLLVGLFKNKPCLVLSY 417
F+N + N + V LV ++ L S+L VG K CL+L+Y
Sbjct: 45 FVNELLGTNLFSGAVYVLLVTSIIICLVSFLGCVGAGKEVKCLLLTY 91
>AE014296-2984|AAN11686.1| 236|Drosophila melanogaster CG5492-PA,
isoform A protein.
Length = 236
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 277 FLNVEIXRNAMEATLAVCLVFFVLWMLFSWLLLVGLFKNKPCLVLSY 417
F+N + N + V LV ++ L S+L VG K CL+L+Y
Sbjct: 45 FVNELLGTNLFSGAVYVLLVTSIIICLVSFLGCVGAGKEVKCLLLTY 91
>Y00043-1|CAA68259.1| 383|Drosophila melanogaster protein (
Drosophila R7 photoreceptorcell opsin gene. ).
Length = 383
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 310 EATLAVCLVFFVLWMLFSWLLLVGLFKNKPCL 405
+A + +C +FF W + + L+G F +K L
Sbjct: 284 KAAITICFLFFCSWTPYGVMSLIGAFGDKTLL 315
>M17718-1|AAA28854.1| 383|Drosophila melanogaster protein (
D.melanogaster opsin(Rh3) gene, complete cds. ).
Length = 383
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 310 EATLAVCLVFFVLWMLFSWLLLVGLFKNKPCL 405
+A + +C +FF W + + L+G F +K L
Sbjct: 284 KAAITICFLFFCSWTPYGVMSLIGAFGDKTLL 315
>AF184224-1|AAD55735.1| 383|Drosophila melanogaster Rh3 protein.
Length = 383
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 310 EATLAVCLVFFVLWMLFSWLLLVGLFKNKPCL 405
+A + +C +FF W + + L+G F +K L
Sbjct: 284 KAAITICFLFFCSWTPYGVMSLIGAFGDKTLL 315
>AE014297-2763|AAG22157.1| 383|Drosophila melanogaster CG10888-PA
protein.
Length = 383
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 310 EATLAVCLVFFVLWMLFSWLLLVGLFKNKPCL 405
+A + +C +FF W + + L+G F +K L
Sbjct: 284 KAAITICFLFFCSWTPYGVMSLIGAFGDKTLL 315
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,732,954
Number of Sequences: 53049
Number of extensions: 399785
Number of successful extensions: 1085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -