Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M14
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.10 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.71 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   0.94 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   0.94 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.0  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   5.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = -1

Query: 413  LSTKHGLFLKSPTSSSQEKSIHSTKKTRQTARVASIAFLLISTLRKPL 270
            + T++ +  ++ TSS Q K I ST++ +Q+ +  ++  +      KP+
Sbjct: 1158 IQTQYQVVSQAQTSSGQSKIIASTQQQQQSQQAQTVRMVTAQLAGKPI 1205


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 235 DEKSSFTEGNIFNGFLNVEIXRNAMEATLAVCLVFFVLWMLF 360
           D  +S  +G I      ++  ++ ++   AV ++FF+ W  F
Sbjct: 245 DTLNSVVQGAIHGDSRQIQSRKSVIKMLSAVVILFFICWAPF 286


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +1

Query: 310 EATLAVCLVFFVLWMLFSWL 369
           E+ ++ C++F VL++LFS+L
Sbjct: 10  ESDVSSCVIFGVLFVLFSFL 29


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +1

Query: 310 EATLAVCLVFFVLWMLFSWL 369
           E+ ++ C++F VL++LFS+L
Sbjct: 10  ESDVSSCVIFGVLFVLFSFL 29


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 298 RNAMEATLAVCLVFFVLWMLFSWLLLVGLF----KNKP 399
           RN +   +AV + FF+ W  F    L+ ++    K+KP
Sbjct: 281 RNVIRMLVAVVVAFFICWAPFHAQRLLAVYAQNSKDKP 318


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/44 (22%), Positives = 17/44 (38%)
 Frame = +1

Query: 229 EDDEKSSFTEGNIFNGFLNVEIXRNAMEATLAVCLVFFVLWMLF 360
           + D  +   EG +      V+  +       AV + FF+ W  F
Sbjct: 233 QSDSLAENVEGYVHGETKQVQSRKTITRMLSAVVITFFICWAPF 276


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 447 HYSQYYPVRKIAEH*TRFVFEES 379
           HYS+++PV +I      F+ EES
Sbjct: 55  HYSKFFPVSEILS----FLIEES 73


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  LLSIIYFLTNHDNY*EMLLL 127
           +L+++YF+  +D Y E  +L
Sbjct: 78  VLNVLYFINKNDKYEENTIL 97



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 192 FRSYDTVFCENIRR*RKK 245
           F+  DT+ C NI+R ++K
Sbjct: 666 FQPGDTIICINIKRQKEK 683


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 129  APLETSRHSDSTRKYDCF 182
            AP+     SD  R YDC+
Sbjct: 1052 APMPACFDSDRERLYDCY 1069


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,646
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)