Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M10
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.68 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    28   0.89 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   8.3  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 146  YRSIDCIVESIAKCSKHIIIRRISVLYHIKIEISLFKFY*MLFV 15
            Y  +D +V  + KC K +I   +  +  IKIE SL+K +  L++
Sbjct: 1038 YNFVDDLVIFLKKCDKTLIEGFVLPILSIKIEKSLYKGFCYLYL 1081


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +3

Query: 78  NPPDDNVFRAFCNALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRRVPT--IDQCYDDD 251
           N  DD+++R FC  L  ++  P + F  +    N + +  +   Y    T   D  Y+D 
Sbjct: 263 NSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNWEVFHDFMSTYASTTTSQTDSSYND- 321

Query: 252 VVCDFEANAQFKRXRAVD-SXILSILRQRY 338
            V D   ++Q     ++D S + SIL   Y
Sbjct: 322 -VHDIVGSSQPDYLESLDYSQLFSILYALY 350


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 376 LNAGLFGTSTSLLRKLGSLNMVTSVL 453
           +N+G++  STS L    ++NMVT  L
Sbjct: 134 VNSGMWSASTSFLPSSFAMNMVTLAL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,723
Number of Sequences: 5004
Number of extensions: 39911
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)