Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M09
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    26   4.5  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.0  

>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 529 LFIVKVIYRQMMTDGASNHLHFVTILTLYSKCLLLF 422
           LF+   +   ++ DGA++ L  V +L LY+  +L F
Sbjct: 372 LFVSVFLVNYLIQDGATHWLEGVQLLALYAIVVLAF 407


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 137 ALRKKIHHSFLCIQFWNFFANFVSEMKFK 51
           AL   IH+SFL + F  FF  FV  M  K
Sbjct: 546 ALLGSIHYSFLFVSFM-FFCAFVCSMFIK 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,162
Number of Sequences: 5004
Number of extensions: 31346
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)